Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3473g00016 ATGGATCGAAGAAACATTTTGTTATCGGCGCTGAGCGTTGGGGTGGGTGTAGGAGTGGGGATTGGGTTGTCCTCCGGACAAGGCCTTCCCAAATGGGGTGTTAATGGTAATTCTTCCTCAGACGGCGTTACTCCGGAGAACCTCGAACATGAAATGCTACGAATGGTCGTGGATGGCAGAGAAACCAATGTCACTTTCGATCAATTCCCTTTTTATCTTAGGGAGCAGACAAGGGTAACGCTAACAAGTGCTGCTTATGTTCATTTGAAGAATGCGGAGGTTTCCAGACATACACGGAATCTTGCTCCTGCAAGCCGGACTATCATGCTTTCAGGGCCAGCGGAGCTTTATCAACAAGTGCTTGCCAAAGCTTTAGCCCACTACTTTGAGGCGAAGTTGCTTCTGTTAGATCTCACTGACTTTTCATTGAAGATTCAGAATAAATATGGTTATGCCAACAATCGATCGATTTTCAAAAGGTCTACCTCAGAGACAACTTTGGAGCGGATATCCGACCTATTTGAATCATTTTCAATCTTTTCACAAAAAGAAGAACTTAAAGGGACAATCCACAGGCAACCCAGTGGAGTGGACCTTCGGTCAACGGAATCTGAAAGATTGTATAATCCTTCTAAGATTCGTAGGAATGCGTCTGCCTCTGCAAATATCAGTAACCTTGCTTTGCAAAGCAATACTACAAATTCAGCCCCTCAGAAAAACATAACGAACTTGCCTTTTGATGAAAAGCTTCTTGTACAAACTCTTTATAAGGTTCTGGTTTATGTATCAAAAACCTATCCTATTGTTCTATATTTGCGGGATGTTGACAAGTTATTATATAGATCACAACGGATATATAACCTATTCCAGAAAATGTTGAATAAACTGTATGGACGAATTTTGATTCTTGGCTCACGAGTTTTGGATTCTGGAAGTGACTACAAAGAAGTGGATGAAAGACTTTCTTCCGTCTTCCCCTACAACATAGAAATCAGTCCCCCAGAAGATGAATATTATCATGTCAGCTGGAAGTCTCAATTTGAAGAGAACATGAAGACGATACAGACTCAGGATAATAGGAACCATATCATGGAAGTGCTTGCAGCCAATGATCTTTATTGTGATGACCTGGGTTCCATCTGTGTGGCAGATACAATGGCTTTCAGTGACCATATAGAAGAGATCGTCGTGTCAGCAATTTCCCATCATTTAATGAATAACATAGATCCTGAATACAGAAATGGCAAACTAGTTATTCCTTGTAGCAGCTTGTCCCATGCATGGGGTATATTCCAGGAGGGGAAATTCAGTACAAGAGATACATTAAAATTAGAAGCCCAGGCAGTTACGACTGAGCCGAGAGAAGAAGCTGTTGTGAAGCCAGAAACAGCGTCAGAAAAACCTGCTCCTGAAATAAAGGCTGAAGCAGATACATCAATTTCAGTGGGAACAACTGACGGTGAAAATGTACTTCCTGCATCAAAAGTTGAAGTTCCCCCTGACAATGAGTTTGAGAAGCGAATAAGGCCTGAGGTAATACCAGCAAACGAAATTGGTGTAAAATTCTCTGATGTTGGTGCCTTAGATGAGACCAAAGAATCGCTTCAAGAACTAGTTATGCTTCCTCTTCGAAGGCCAGACCTTTTCCGCGGAGGCCTTCTAAAGCCTTGTAAAGGAATATTGCTTTTTGGACCTCCTGGCACAGGGAAGACAATGCTGGCAAAGGCCATTGCAAACGAAGCTGGAGCAAGTTTCATTAATGTATCCATGTCCACCGTCACCTCTAAATGGTTTGGTGAAGATGAGAAGAATGTTCGAGCTTTGTTCACTCTGGCAGCCAAGGTCTCCCCAACTATTATATTTGTTGATGAGGTTGATAGTATGCTGGGGCAACGTACCAGAGTCGGAGAGCATGAAGCCATGCGGAAAATAAAGAATGAGTTTATGACACTTTGGGATGGACTAATGACAAATCCAGCAGAGCGTATCCTTGTTCTTGCTGCGACCAATAGGCCGTTTGACCTGGATGAAGCAATAATTAGGAGATTTGAAAGGAGAATAATGGTGGGGATGCCAAGCTTGGAGAACCGGGAAAAAATTTTGAGGACTCTTTTGCGAAGAGAAAAGGTGGACAAGAAATTTGATTTTAAGGAACTCGCAACTATGACAGAAGGATACAGCGGAAGTGATCTCAAGAACTTGTGTACAACTGCTGCTTACAGACCTGTTAGAGAGTTAATTCAACAAGAGAGACTAAAAATGCTGGAGAAAAGGCAGAAAGGTGTTGAAGAACAGAATAACAATGTCCAAGAAGTACCGGGAAATCAATCTACAGTGGGAAATATCCAAGATGCTTTGGAAGCAAAAGAGGAAGTTAAACAGGAAAGAGTAATTTCCCTTAGACCTTTGAACATGCAAGACTTCAAAGAGGCTAGGAGTCAGGTTTCCGCAAGCTACGCAGCTGAGGGGGCTGGAATGAGTGAGTTAAAGCAGTGGAATGAAATGTATGGGGAAGGAGGTTCAAGGAAGCGAGAGCAATTATCTTACTTCCTGTGA 2556 0.4245 MDRRNILLSALSVGVGVGVGIGLSSGQGLPKWGVNGNSSSDGVTPENLEHEMLRMVVDGRETNVTFDQFPFYLREQTRVTLTSAAYVHLKNAEVSRHTRNLAPASRTIMLSGPAELYQQVLAKALAHYFEAKLLLLDLTDFSLKIQNKYGYANNRSIFKRSTSETTLERISDLFESFSIFSQKEELKGTIHRQPSGVDLRSTESERLYNPSKIRRNASASANISNLALQSNTTNSAPQKNITNLPFDEKLLVQTLYKVLVYVSKTYPIVLYLRDVDKLLYRSQRIYNLFQKMLNKLYGRILILGSRVLDSGSDYKEVDERLSSVFPYNIEISPPEDEYYHVSWKSQFEENMKTIQTQDNRNHIMEVLAANDLYCDDLGSICVADTMAFSDHIEEIVVSAISHHLMNNIDPEYRNGKLVIPCSSLSHAWGIFQEGKFSTRDTLKLEAQAVTTEPREEAVVKPETASEKPAPEIKAEADTSISVGTTDGENVLPASKVEVPPDNEFEKRIRPEVIPANEIGVKFSDVGALDETKESLQELVMLPLRRPDLFRGGLLKPCKGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTVTSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTLWDGLMTNPAERILVLAATNRPFDLDEAIIRRFERRIMVGMPSLENREKILRTLLRREKVDKKFDFKELATMTEGYSGSDLKNLCTTAAYRPVRELIQQERLKMLEKRQKGVEEQNNNVQEVPGNQSTVGNIQDALEAKEEVKQERVISLRPLNMQDFKEARSQVSASYAAEGAGMSELKQWNEMYGEGGSRKREQLSYFL 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3473g00016 851 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 520 759 IPR027417 -
Vium3473g00016 851 ProSitePatterns AAA-protein family signature. 663 682 IPR003960 GO:0005524|GO:0016887
Vium3473g00016 851 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 519 694 - -
Vium3473g00016 851 SMART AAA_5 556 693 IPR003593 GO:0016887
Vium3473g00016 851 Pfam AAA+ lid domain 714 749 IPR041569 -
Vium3473g00016 851 Gene3D - 692 763 - -
Vium3473g00016 851 Pfam ATPase family associated with various cellular activities (AAA) 560 690 IPR003959 GO:0005524|GO:0016887
Vium3473g00016 851 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 48 850 - -
Vium3473g00016 851 Coils Coil 752 772 - -
Vium3473g00016 851 Gene3D - 519 691 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3473g00016 Vium-Chr3473 95161 102788 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3473g00016 472 754 Calmodulin-binding Proteins AT3G56690 34.708 2.31e-43 168