Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3471g00004 ATGAAGGACTGGTTGTTTTTCGACAAGAATTTTAATGGTTTGTCGGACGACCTACTCGATGATGTCATGGACATCGAGTTTTTCGATTTCCCCTTTGAAGACGTGGAAACTGATGATGGTGCGGAGCAAGATTGGAATGCTCAGTTCAAATTCCTTGAAGAGCCTTCACTGGGAATTTTTCCTGGACAATCGTCTCAACTCTGTGCTCATACTCAAAATGAGAATGTGAAAGTCGAAACGAGTTTCTATGCTTCTACAGCGAAGACGGCAGGTCCTAAATATAGCAAAAATGTTCCTATCCAGAAAGTCTCTTTCACTGCAAAAGATTTGCACCAATTCCAAACTAACAGCCCAGTTTCTGTTTTTGAAAACAGTAGTAGTAGTTCTTCGGTTGAGAACTCTAACTTGGAGTTACCTGTTATCCCAACAAAGCGTCCCCGAAGCAAACGCAGGCCTCTCTCAAACATCACCCTGCTATACTCCATTCCTTTCATCTTTACTTCACCAGTTTTTCAAAAATCAGAATTTGAAGCACAACCATTTGGGAAATTTTCAAGCGTGATAAAAAAGCAGAGGAAAAAGAACATTCCCATGGTAGGTAACAAAATTGAGATGAAGAAATCCTCATCAGAGGAATCAGTTGGTATCAGAAAATGCATGCACTGTGAGGTGACAAAGACACCACAATGGAGAGAGGGACCAATGGGTCCAAAGACCCTATGCAACGCTTGTGGAGTTCGGTACCGCTCTGGCAGGCTCTTTGCTGAATACCGTCCTGCAGCTAGCCCCACTTTTGTAGCATCATTGCACTCTAACTCTCACAAGAAGGTCTTAGAAATTAGAAACAGAGACACCCATGTGACAGTTAGATGA 873 0.425 MKDWLFFDKNFNGLSDDLLDDVMDIEFFDFPFEDVETDDGAEQDWNAQFKFLEEPSLGIFPGQSSQLCAHTQNENVKVETSFYASTAKTAGPKYSKNVPIQKVSFTAKDLHQFQTNSPVSVFENSSSSSSVENSNLELPVIPTKRPRSKRRPLSNITLLYSIPFIFTSPVFQKSEFEAQPFGKFSSVIKKQRKKNIPMVGNKIEMKKSSSEESVGIRKCMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFAEYRPAASPTFVASLHSNSHKKVLEIRNRDTHVTVR 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3471g00004 290 ProSiteProfiles GATA-type zinc finger domain profile. 217 249 IPR000679 GO:0006355|GO:0043565
Vium3471g00004 290 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 217 275 - -
Vium3471g00004 290 ProSitePatterns GATA-type zinc finger domain. 219 244 IPR000679 GO:0006355|GO:0043565
Vium3471g00004 290 Gene3D - 216 263 IPR013088 GO:0006355|GO:0008270
Vium3471g00004 290 SMART GATA_3 213 263 IPR000679 GO:0006355|GO:0043565
Vium3471g00004 290 CDD ZnF_GATA 218 265 IPR000679 GO:0006355|GO:0043565
Vium3471g00004 290 PANTHER GATA TRANSCRIPTION FACTOR 36 283 - -
Vium3471g00004 290 Pfam GATA zinc finger 219 252 IPR000679 GO:0006355|GO:0043565
Vium3471g00004 290 FunFam GATA transcription factor 207 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3471g00004 Vium-Chr3471 41145 47523 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3471g00004 8 284 C2C2-Gata Transcription Factor Family AT1G08010 39.189 4.77e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vium3471g00004 GATA 3.1e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3471g00004 - - gmx:100815208 380.948