Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3471g00001 ATGAAGGAGGGTGAGAAGGTATTGGATCCGCAGCTATGGCACGCGTGTGCTGGTGGCATGGTTCAGATGCCCAAGGTGAACTCCAAAGTCTTCTACTTCCCACAGGGTCATGCAGAGCACGCCCACACCAACATTGATCTCAGGGTTCCGCCACACATTCTCTGCAACGTCGAGGCGGTGAAGTTCATGGCGGACCCAGAAACCGACGAGGTTTTTGCCAAACTGAGTCTGGTCCCTCTCAGAAACTCGGAACCCGGTACCGACGCGGAGGGGGGTGCTGACGTGGCGGAGGCTTCGGAGAAGCCCGCGTCTTTTGCGAAGACTCTGACGCAGTCGGACGCCAACAATGGTGGCGGGTTTTCGGTGCCACGGTACTGCGCGGAGACGATTTTTCCGCGGCTGGACTACTCGGCGGAGCCGCCGGTGCAGACGGTGGTGGCAAAGGACGTGCAGGGGGAGACGTGGAGGTTCCGGCACATATACCGAGGGACACCACGTCGGCACTTGCTGACGACTGGGTGGAGCAGTTTCGTGAACCAGAAGAAACTGGTGGCTGGGGATTCTGTGGTGTTTCTGAGGTCTGAAAATGGAGAGTTGTGTGTTGGGATTCGGAGGGCAAAGAAGGGAATCGGGTTTGAGGTGTGGAACTCTGCTTCTGGTTCAGGGTCTGGAAGTATCGGTGGAAGTGGGAATTGTGGGATTGGTCCTTATGGGCCTTTCTCTTTTTTCCTGAGAGAGGAGAACAAGAGCTTAAGGAATGGTGGCGGCGGCGGTGGTGGTGGGAATTTGAGTGGCAGGGCCAAAGTGAGGCCTGAGGCTGTTGTTGAAGTAGTGACCCTGGCTGCTGCTAACAAACCTTTTGAGGTTGTTTATTATCCAAGAGCCAGTACTCCTGAGTTTTGCATTAAGGCTTCTTCTGTAAGGGCTGCTATGAGGATTCAGTGGTGTTCTGGGATGAGGTTCAAGATGGCCTTTGAGACTGAGGATGCTTCCAGAATAAGCTGGTTCATGGGAACCATTGCTTCTGTTCAGGTTCTTGACCCCATTCGCTGGCCTAATTCCCCATGGAGGCTTCTTCAGGTAACTTGGGATGAGCCAGATTTACTGCAAAATGTGAAGCGTGTTAGCCCGTGGTTGGTTGAACTGGTGTCAAACTTGCCAGTGATAAATTTCACACCTTTCTCTCCACCAAGAAAGAAGCTGCGGTTTCCGCAGCACCCGGAGTTCCCCCTTGATGTTCAATTTCCAATACCACCGTTTTCAGGCAACCAGCTCGGGCCTAACCACCCCTTGTGTGGTTTTTCAGATAACGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAACATCACTATCAGATCTCCACCTTAACAGTAAACTGCAGTTGGGGTTGCTTCCATCTAATATCCAGCAACATGGACTGTATAGTGGGATTTCAAGTGGTAACACGACCAACCATGATAAGAGCAAAGAAAGCTTATCACACTTGCTGACCATTGGGAAATCTAGCAAGACTTTGGAGAAATCTGATGATGTTAAGAAACATCAGTTTTTGCTTTTTGGTCAACCAATACTCACCGAGCAACAGATTTCTGGAGACGTGTTGTCCCGTGGGAAAAAATCACCGGATGATGTCAAAGACAAAGAGAAGTGCTTTCTGGATGACTCCCAATCTGCACTCTTTTCATCAGGGAAAGCTTCTGCTGCCGAGTTCTCTTGGCAACTTGGCTTGGACACTGGTCATTGTAAAGTTTTCTTGGAGTCAGAAGATGTTGGAAGGACCTTAGACCTATCACGGCTTGGTTCTTATGAAGAACTCTATAGAAGGCTTTCCTACATGTTTGGAGTTGAAAGATCTGAGATTCCAAATTACGTGTTCTACTATGATGCAAAAGGTGCTGTTAAGCAAACTGGAGAAGAACCTTTCAGTGACTTCATGAAAACAGCGAAAAGGTTGACAATTCTGACGGATTCAGGCAGCAAAAATGTTACAAGGGCCTTTATTACAGGAACTCGGAATGGTGAACATGGACTGGATGCATCAAATAAAACAGGCCCTCTGAGCATATTTGCTTAA 2085 0.4964 MKEGEKVLDPQLWHACAGGMVQMPKVNSKVFYFPQGHAEHAHTNIDLRVPPHILCNVEAVKFMADPETDEVFAKLSLVPLRNSEPGTDAEGGADVAEASEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVVAKDVQGETWRFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFLRSENGELCVGIRRAKKGIGFEVWNSASGSGSGSIGGSGNCGIGPYGPFSFFLREENKSLRNGGGGGGGGNLSGRAKVRPEAVVEVVTLAAANKPFEVVYYPRASTPEFCIKASSVRAAMRIQWCSGMRFKMAFETEDASRISWFMGTIASVQVLDPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNLPVINFTPFSPPRKKLRFPQHPEFPLDVQFPIPPFSGNQLGPNHPLCGFSDNAPAGIQGARHAQIGTSLSDLHLNSKLQLGLLPSNIQQHGLYSGISSGNTTNHDKSKESLSHLLTIGKSSKTLEKSDDVKKHQFLLFGQPILTEQQISGDVLSRGKKSPDDVKDKEKCFLDDSQSALFSSGKASAAEFSWQLGLDTGHCKVFLESEDVGRTLDLSRLGSYEELYRRLSYMFGVERSEIPNYVFYYDAKGAVKQTGEEPFSDFMKTAKRLTILTDSGSKNVTRAFITGTRNGEHGLDASNKTGPLSIFA 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3471g00001 694 Gene3D - 103 207 IPR015300 -
Vium3471g00001 694 SUPERFAMILY DNA-binding pseudobarrel domain 100 206 IPR015300 -
Vium3471g00001 694 Gene3D - 315 387 - -
Vium3471g00001 694 Gene3D - 581 667 - -
Vium3471g00001 694 Pfam B3 DNA binding domain 105 206 IPR003340 GO:0003677
Vium3471g00001 694 CDD B3_DNA 104 205 IPR003340 GO:0003677
Vium3471g00001 694 ProSiteProfiles PB1 domain profile. 582 662 IPR000270 GO:0005515
Vium3471g00001 694 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 663 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vium3471g00001 694 ProSiteProfiles B3 DNA-binding domain profile. 105 207 IPR003340 GO:0003677
Vium3471g00001 694 FunFam Auxin response factor 315 388 - -
Vium3471g00001 694 SMART B3_2 105 207 IPR003340 GO:0003677
Vium3471g00001 694 Pfam Auxin response factor 278 360 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vium3471g00001 694 FunFam Auxin response factor 103 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3471g00001 Vium-Chr3471 8557 12078 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3471g00001 1 667 B3 DNA Binding Superfamily AT4G30080 57.410 0.0 712
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vium3471g00001 B3 1.1e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3471g00001 - - gmx:100814686 1173.3