Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3468g00004 ATGGCTTCCTATAAACATTTCTCTTTTTTCATCCATGCCTTTGCTTTTGCAGCTGTTGTATCAACTGCATTTTCAGCACTGTCCCCTAATTATTATGACTACTCATGCCCTAACGCTTTGAGCACCATCAGAAGTGTTGTGGAGGCTGCTGTGCAGAGAGAGCAGCGTATGGGAGCTTCTCTGCTACGCTTGCACTTTCATGATTGCTTTGTTAACGGCTGTGATGGTTCGATTCTGCTAGACCCTTCACCCACCATTGACAGTGAAAAGAATGCATTTGCAAATGTTCAATCTGCTAGAGGATTTGAAGTTGTGGATGAGATTAAGCAGGCTGTGGACCAAGCATGTGGAAAACCAGTTGTTTCTTGTGCAGATATATTGGCTGTTGCTGCACGTGACTCTGTCGTTGCGCTAGGTGGGCCAACATGGAAAGTGAAACTAGGAAGAAGAGACTCCACCACAGCAAGCCGTGAAGCAGCAAATGCAAACATTCCAGCACCATTTTTTAGCCTCTCTGAACTCATCACCAACTTCAAGAACCATGGTCTTGATAAGAAAGACCTTGTTGTTCTTTCTGGAGGCCACACCATAGGATTTGCACGTTGTGCTACCTTTAGGGACCATATCTACAATGACTCTAATATCAATCCCCGTTTTGCACAAGAACTTAAGTACATTTGCCCTAGAAAAGGAGGTGACTTGAACCTTGCTCCTTTGGACGACACAGCAGCGCAATTTGATTCAGCCTACTTCTCTGATTTGGTTCATAGGCAAGGGGTACTTCACTCTGATCAGGAACTGTTCAATGGTGGTTCTACTGATGCATTGGTTAAAAGATATAGCTACAATTCCAAGGCTTTCCACCAGGACTTTGCAAAATCTATGATTAAGATGGGAAACATAAAACCTTCCACCGGGAGTAAAGGGCAAATTCGTTTCAACTGCAGGATAGTGAACTAA 960 0.4385 MASYKHFSFFIHAFAFAAVVSTAFSALSPNYYDYSCPNALSTIRSVVEAAVQREQRMGASLLRLHFHDCFVNGCDGSILLDPSPTIDSEKNAFANVQSARGFEVVDEIKQAVDQACGKPVVSCADILAVAARDSVVALGGPTWKVKLGRRDSTTASREAANANIPAPFFSLSELITNFKNHGLDKKDLVVLSGGHTIGFARCATFRDHIYNDSNINPRFAQELKYICPRKGGDLNLAPLDDTAAQFDSAYFSDLVHRQGVLHSDQELFNGGSTDALVKRYSYNSKAFHQDFAKSMIKMGNIKPSTGSKGQIRFNCRIVN 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3468g00004 319 PANTHER PEROXIDASE 72-RELATED 24 317 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3468g00004 319 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3468g00004 319 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3468g00004 319 PRINTS Haem peroxidase superfamily signature 187 202 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3468g00004 319 PRINTS Haem peroxidase superfamily signature 239 254 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3468g00004 319 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3468g00004 319 FunFam Peroxidase 165 298 - -
Vium3468g00004 319 Pfam Peroxidase 44 281 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3468g00004 319 CDD secretory_peroxidase 27 318 IPR033905 GO:0004601|GO:0042744
Vium3468g00004 319 PRINTS Plant peroxidase signature 253 270 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3468g00004 319 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3468g00004 319 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3468g00004 319 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3468g00004 319 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3468g00004 319 PRINTS Plant peroxidase signature 237 252 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3468g00004 319 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3468g00004 319 PRINTS Plant peroxidase signature 186 198 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3468g00004 319 PRINTS Plant peroxidase signature 293 306 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3468g00004 319 ProSitePatterns Peroxidases active site signature. 58 69 IPR019794 GO:0004601
Vium3468g00004 319 ProSitePatterns Peroxidases proximal heme-ligand signature. 187 197 IPR019793 -
Vium3468g00004 319 Gene3D - 30 316 - -
Vium3468g00004 319 ProSiteProfiles Plant heme peroxidase family profile. 26 319 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3468g00004 319 Gene3D Peroxidase, domain 2 165 298 - -
Vium3468g00004 319 SUPERFAMILY Heme-dependent peroxidases 27 319 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vium3468g00004 319 FunFam Peroxidase 30 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3468g00004 Vium-Chr3468 95508 97658 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3468g00004 27 319 Peroxidase AT5G05340 60.135 1.39e-125 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3468g00004 K00430 - gmx:100812820 530.406