Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3468g00002 ATGGCTGCAATTTCTCAACAAAGGGTCAAAATCTGTTTGGTCTTATTATGTCTTGTTTCAGCTTCAGCTTATTCAACATCTTCGTCAACAACTACTTCTGTCACTTTATCTAATTCTCTGCTAAACCCCCTTTTTTATGCTATCAAGTGTCCCCAAGCTCTAGACACCATTAAGAATATAGTAATCAATGCTTTGGCAAATGACCCTCGCATGGGTGCTTCCTTGCTCCGTCTTCATTTCCATGATTGCTTTGTCCAAGGATGTGACGCATCGGTTTTGTTAGCGGACACAGCAACTTTCAGAGGCGAACAAAGTGCCTTACCTAATGTGAATTCTCTAAGGGGTTTTGAAGTCGTAGAGAAAATAAAATATGCACTAGAGCATGAATGCCCCGGTGTTGTATCTTGCGCTGACATCTTAGCAGTTGCTGCAAGGGATTCTGTTGTTGCTCTTGGTGGACCTGGATGGCCTGTTGGCTTGGGCAGAAGAGACTCAACCACTGCAAGTTTCAGTGGAGCCAACACTGATCTACCATCTCCCTTTCTCAATCTCGATGGTCTTATCGCTGCCTTCCAAAAGAAGCTTTTCACAGCAAAGGAAATGGTGGCTTTATCAGGTGCTCACACAATTGGCAGTGCCAGATGTTTACTGTTCCGATCAAGGATTTATAACGAGAGCGATATAGACCCCACTTATGCAATCCAAATGAGAGCTAACTGTCCCAAGGTTGGTGGTGATAGCAACTTGAGTCCCATAGACATCACCACTAAACATTCTTTCGACAATGCTTACTACACAAATTTAATTAACAAAAGGGGTCTTTTCCACTCTGATCAACAACTCTTCAGTGGCGGTTCCACGGCCACCCAAGTCAAATCTTACAGCACTTTCCCGTTACTCTTTAAATTCGATTTCGCTAACGCCATGCTCAAGATGAGCAACCTTAGCCCACTCACCGGCACGCAGGGTCAGATCAGAAAAGTGTGCAGCAGAGTGAATTGA 1002 0.4411 MAAISQQRVKICLVLLCLVSASAYSTSSSTTTSVTLSNSLLNPLFYAIKCPQALDTIKNIVINALANDPRMGASLLRLHFHDCFVQGCDASVLLADTATFRGEQSALPNVNSLRGFEVVEKIKYALEHECPGVVSCADILAVAARDSVVALGGPGWPVGLGRRDSTTASFSGANTDLPSPFLNLDGLIAAFQKKLFTAKEMVALSGAHTIGSARCLLFRSRIYNESDIDPTYAIQMRANCPKVGGDSNLSPIDITTKHSFDNAYYTNLINKRGLFHSDQQLFSGGSTATQVKSYSTFPLLFKFDFANAMLKMSNLSPLTGTQGQIRKVCSRVN 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3468g00002 333 ProSitePatterns Peroxidases active site signature. 72 83 IPR019794 GO:0004601
Vium3468g00002 333 ProSitePatterns Peroxidases proximal heme-ligand signature. 200 210 IPR019793 -
Vium3468g00002 333 FunFam Peroxidase 178 312 - -
Vium3468g00002 333 Gene3D Peroxidase, domain 2 178 312 - -
Vium3468g00002 333 Pfam Peroxidase 59 295 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3468g00002 333 ProSiteProfiles Plant heme peroxidase family profile. 40 333 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3468g00002 333 CDD secretory_peroxidase 41 332 IPR033905 GO:0004601|GO:0042744
Vium3468g00002 333 PRINTS Haem peroxidase superfamily signature 72 86 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3468g00002 333 PRINTS Haem peroxidase superfamily signature 200 215 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3468g00002 333 PRINTS Haem peroxidase superfamily signature 134 151 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3468g00002 333 PRINTS Haem peroxidase superfamily signature 253 268 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3468g00002 333 PRINTS Haem peroxidase superfamily signature 152 164 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3468g00002 333 PRINTS Plant peroxidase signature 199 211 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3468g00002 333 PRINTS Plant peroxidase signature 251 266 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3468g00002 333 PRINTS Plant peroxidase signature 307 320 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3468g00002 333 PRINTS Plant peroxidase signature 50 69 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3468g00002 333 PRINTS Plant peroxidase signature 114 127 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3468g00002 333 PRINTS Plant peroxidase signature 133 143 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3468g00002 333 PRINTS Plant peroxidase signature 74 94 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3468g00002 333 PRINTS Plant peroxidase signature 152 167 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3468g00002 333 PRINTS Plant peroxidase signature 267 284 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3468g00002 333 PANTHER PEROXIDASE 72-RELATED 38 332 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3468g00002 333 Gene3D - 45 330 - -
Vium3468g00002 333 FunFam Peroxidase 44 185 - -
Vium3468g00002 333 SUPERFAMILY Heme-dependent peroxidases 41 333 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3468g00002 Vium-Chr3468 17655 20140 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3468g00002 45 333 Peroxidase AT5G05340 56.357 5.44e-123 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3468g00002 K00430 - gmx:100811432 444.891