Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3462g00003 ATGTTGATGCAAAAAACAAAGGTGGAAGAATTGGAAAAGCAAGTGATGAAACAAAGAGAAGTTGGAGTGATATACAAGAAAAGAATGGAAAGAACACAAGACTACTTAAGATACTGTCTTCAGACAGCACAAGAAAATGGATTATTGGATCTCTTTCTGAGCTGCAATGGTGAATTTCAACCATCTCCAGTCTCTCTTCACTCCATTACCAGCCCTCAAGCTCATGCCCACCACCCCAATCTATCACTCATTATTCATCAAGCTAAAACCAATGGCTGGTACATTCATCCAAATGAGATTAAATTGGAAGAAAAAATTGGGGAAGGAAGCACCGCAGAGATTCACAGAGGAACATGGCGTGGATTTGAGGTCGCAGTGAAGTGCATTTCTGAAGAGTTTTTCCGTATAAACGAAAACGGCGTCGTTTACTTCTCTCAGGAACTCGAAACGCTGTCGCGGCAACGCCACAGGTTCGTGCTTCAGCTCATGGGCGCGTGCATCGAACCTCCACAGCACGCGTGGGTGGTCACCGAGTACCTGAGCACCACGCTGAAGGAGTGGCTCCATGGACCTGGGAACCGGCGCAGTGAGCGGATGGTGCCACTCCCACCCTTGCAGGAGAGAGTGGGCCGGGCCTTGGAAATAGCCCAAGCTATGCAGTACTTGCACGAGCAAAAGCCCAAACTGGTTCACCGTGACTTGAAGCCCAGCAACATTTTTCTTGATGACGCCCTGCATGTTAGAGTCGCGGACTTCGGCCACGCACGGTTCTTGGGTGACGAAGAAATGGCCCTCACCGGAGAAACAGGAACATACGTTTACATGGCACCAGAGGTAATCCGATGTGAACCTTATAATGAAAGTTGTGATGTGTATAGTTTTGGGATCATACTGAACGAGCTACTAACTGGGAATTACCCTTATGTTGAGACAGAATATGGTCCCACCAAGATTGCCATGGAAGTTGTGGAGGGTAAGCTTCGACCTAAGCTTCCATGTGATGATGATGTTGATAAACTCGGAGAGCTTATTGACCTTATTTGTCTTTGTTGGGACCCAAATCCTACTACTCGACCATCCTTTGCAACAATCACCATTTCTCTCAAAACTTATGTTAAGGAGAATCTCATTTAA 1134 0.4656 MLMQKTKVEELEKQVMKQREVGVIYKKRMERTQDYLRYCLQTAQENGLLDLFLSCNGEFQPSPVSLHSITSPQAHAHHPNLSLIIHQAKTNGWYIHPNEIKLEEKIGEGSTAEIHRGTWRGFEVAVKCISEEFFRINENGVVYFSQELETLSRQRHRFVLQLMGACIEPPQHAWVVTEYLSTTLKEWLHGPGNRRSERMVPLPPLQERVGRALEIAQAMQYLHEQKPKLVHRDLKPSNIFLDDALHVRVADFGHARFLGDEEMALTGETGTYVYMAPEVIRCEPYNESCDVYSFGIILNELLTGNYPYVETEYGPTKIAMEVVEGKLRPKLPCDDDVDKLGELIDLICLCWDPNPTTRPSFATITISLKTYVKENLI 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3462g00003 377 Gene3D Transferase(Phosphotransferase) domain 1 202 376 - -
Vium3462g00003 377 ProSitePatterns Protein kinases ATP-binding region signature. 106 127 IPR017441 GO:0005524
Vium3462g00003 377 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 79 370 - -
Vium3462g00003 377 Pfam Protein kinase domain 102 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3462g00003 377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Vium3462g00003 377 CDD STKc_MAP3K-like 106 365 - -
Vium3462g00003 377 SUPERFAMILY Protein kinase-like (PK-like) 74 364 IPR011009 -
Vium3462g00003 377 SMART serkin_6 100 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3462g00003 377 Gene3D Phosphorylase Kinase; domain 1 77 181 - -
Vium3462g00003 377 ProSiteProfiles Protein kinase domain profile. 100 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3462g00003 Vium-Chr3462 52527 56143 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3462g00003 90 374 MAP Kinase Kinase Kinase AT4G35780 37.762 3.21e-51 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-8 Vium3462g00003 Pkinase 2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3462g00003 - - pvu:PHAVU_001G0393001 667.537