Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3462g00002 ATGAAACAAAGAGAAGTTGGAGTGATATACAAGAAAAGAATGGAAAGAACACAAGACTACTTAAGATACTGTCTTCAGACAGCACAAGAAAATGGATTATTGGATCTCTTTCTGAGCTGCAATGGTGAATTTCAACCATCTCCAGTCTCTCTTCACTCCATTACCAGCCCTCAAGCTCATGCCCACCACCCCAATCTATCACTCATTATTCATCAAGCTAAAACCAATGGCTGGTACATTCATCCAAATGAGATTAAATTGGAAGAAAAAATTGGGGAAGGAAGCACCGCAGAGATTCACAGAGGAACATGGCGTGGATTTGAGGTCGCAGTGAAGTGCATTTCTGAAGAGTTTTTCCGTATAAACGAAAACGGCGTCGTTTACTTCTCTCAGGAACTCGAAACGCTGTCGCGGCAACGCCACAGGTTCGTGCTTCAGCTCATGGGCGCGTGCATCGAACCTCCACAGCACGCGTGGGTGGTCACCGAGTACCTGAGCACCACGCTGAAGGAGTGGCTCCATGGACCTGGGAACCGGCGCAGTGAGCGGATGGTGCCACTCCCACCCTTGCAGGAGAGAGTGGGCCGGGCCTTGGAAATAGCCCAAGCTATGCAGTACTTGCACGAGCAAAAGCCCAAACTGGTTCACCGTGACTTGAAGCCCAGCAACATTTTTCTTGATGACGCCCTGCATGTTAGAGTCGCGGACTTCGGCCACGCACGGTTCTTGGGTGACGAAGAAATGGCCCTCACCGGAGAAACAGGAACATACGTTTACATGGCACCAGAGGTAATCCGATGTGAACCTTATAATGAAAGTTGTGATGTGTATAGTTTTGGGATCATACTGAACGAGCTACTAACTGGGAATTACCCTTATGTTGAGACAGAATATGGTCCCACCAAGATTGCCATGGAAGTTGTGGAGGGTAAGCTTCGACCTAAGCTTCCATGTGATGATGATGTTGATAAACTCGGAGAGCTTATTGACCTTATTTGTCTTTGTTGGGACCCAAATCCTACTACTCGACCATCCTTTGCAACAATCACCATTTCTCTCAAAACTTATGTTAAGGAGAATCTCATTTAA 1089 0.4702 MKQREVGVIYKKRMERTQDYLRYCLQTAQENGLLDLFLSCNGEFQPSPVSLHSITSPQAHAHHPNLSLIIHQAKTNGWYIHPNEIKLEEKIGEGSTAEIHRGTWRGFEVAVKCISEEFFRINENGVVYFSQELETLSRQRHRFVLQLMGACIEPPQHAWVVTEYLSTTLKEWLHGPGNRRSERMVPLPPLQERVGRALEIAQAMQYLHEQKPKLVHRDLKPSNIFLDDALHVRVADFGHARFLGDEEMALTGETGTYVYMAPEVIRCEPYNESCDVYSFGIILNELLTGNYPYVETEYGPTKIAMEVVEGKLRPKLPCDDDVDKLGELIDLICLCWDPNPTTRPSFATITISLKTYVKENLI 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3462g00002 362 Gene3D Phosphorylase Kinase; domain 1 62 166 - -
Vium3462g00002 362 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 68 355 - -
Vium3462g00002 362 ProSiteProfiles Protein kinase domain profile. 85 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3462g00002 362 SUPERFAMILY Protein kinase-like (PK-like) 59 349 IPR011009 -
Vium3462g00002 362 CDD STKc_MAP3K-like 91 350 - -
Vium3462g00002 362 SMART serkin_6 85 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3462g00002 362 Gene3D Transferase(Phosphotransferase) domain 1 187 361 - -
Vium3462g00002 362 ProSitePatterns Protein kinases ATP-binding region signature. 91 112 IPR017441 GO:0005524
Vium3462g00002 362 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Vium3462g00002 362 Pfam Protein kinase domain 87 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3462g00002 Vium-Chr3462 48612 51771 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3462g00002 75 359 MAP Kinase Kinase Kinase AT4G35780 37.762 1.49e-51 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-8 Vium3462g00002 Pkinase 1.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3462g00002 - - pvu:PHAVU_001G0393001 655.981