Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3459g00008 ATGCAAAGAAATAGCAGTGGAATGCATCCTGCATGTGCAGCATGCAAGCATCAAAGGAAGAAATGCAGTGAAAACTGCATATTGGCACCTTACTTTCCATCAAACAGAAGCCGTGAGTTTCATGCTGTGCACAAGGTTTTTGGTGTGAGCAACATAACCAAGTTGGTAAAGAATGCTAGAGAGGATGATAGAAGAAGAGTGGTGGATTCATTGACATGGGAAGCATGTTGCAGACAAAGAGACCCTATTCATGGCCCTTATGGAGAGTACACAAAGGTTTTCAATGAGTACAAGAAAGTGTTGGATGAACTCAAGAGATTCAGAAGCCAACACCAGATGTTGCAGTTTCCCTCTCTAGGGTTCAAGTCTCTGCAAGACAAAGCAGAAGAAGATTATCTGCATGGGACAAAGAATGCTATTATTGATTCTGATATTTACAACAGTTATTGTTCTAATTATTTGCAAGAGTTTCAGAATCTCAGGCCTGAAGTTCTCATACCCTTTCAGCATCACTCTCAACCATACTACATTACAGGTGATCAATTCAAACAATGA 555 0.4036 MQRNSSGMHPACAACKHQRKKCSENCILAPYFPSNRSREFHAVHKVFGVSNITKLVKNAREDDRRRVVDSLTWEACCRQRDPIHGPYGEYTKVFNEYKKVLDELKRFRSQHQMLQFPSLGFKSLQDKAEEDYLHGTKNAIIDSDIYNSYCSNYLQEFQNLRPEVLIPFQHHSQPYYITGDQFKQ 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3459g00008 184 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 114 - -
Vium3459g00008 184 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Vium3459g00008 184 Pfam Lateral organ boundaries (LOB) domain 11 106 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3459g00008 Vium-Chr3459 148129 151012 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3459g00008 9 109 AS2 family AT1G06280 56.436 2.18e-39 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium3459g00008 LOB 1.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3459g00008 - - vra:106780610 378.637