Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3459g00005 ATGGCTCAATTGCCACCAAAAGTTCCAAACATGACACCCAATTGGCCAGACTTTTCTTCTCCTCACCAAAAGATGCCTTCCCTCAAAACCATGGCACCAAACGTCTCAAACCAAAACCCTTCATGGGTGGATGAGTTTCTTGACTTCTCAGCCGCCAGACGCGGTGCTCACCGCCGCTCGGTGAGTGACTCCGTCGCCTTCCTGGAGGCACCAATGCTGGATCATCACTGCAAAAGCCGCGGGAGTGATGGTGGTGGTGACAATGAGAGCGAGTTCGAGAGGTTTGATGACGAACAATTCATGTCCATGTTCAGTGATGAGGCTTCAGGGAATAATAATAGTAATAATAATGACAATGATAATAATAATAATATCAACTACTACCATAGTAATAATAACACCATGATGGCACTCACGGTTTCCTGCTCCAACCCGTCTACACCCTCTGATCACAACAGCATCAACGATGAGAAGGAGATGATGAACAAGGAAAAGGAGGAGGAGCAAGAGAAGAAGCAAGTGAAGAATGAGTCAGATGAGGATGAAAGCCAATGCAAGCAAGAAATCACACAAAACCCCGATGATTGTAATAATAGTAACGCAAATGCAGCAACTTGTTCCAGTGAGAAAATCACAGACCCCAAGAGGGTCAAAAGAATCTTGGCAAATAGACAATCGGCACAGAGATCAAGAGTGAGGAAGCTGCAATACATTTCTGAGCTTGAACGAAGTGTGACTTCATTACAGGCTGAAGTTTCTGTATTGTCTCCGCGAGTTGCATTTTTGGATCATCAACGTTTGCTTCTAAATGTTGACAACAGTGCTTTGAAGCAAAGAATCGCCGCGCTGGCCCAAGACAAGATCTTCAAAGATGCACATCAAGAAGCACTGAAGAGGGAGATAGAGAGACTGAGGCAAGTGTATCACCAACAAAACATAAAGAAGATGGACAATGCTGCAGGATCAACATCCCAATCACCATTACCATCTCCAAAACCACGATGTGACACACTCACTGAAAAGGAACAACTTATCAATGTCTGA 1044 0.4454 MAQLPPKVPNMTPNWPDFSSPHQKMPSLKTMAPNVSNQNPSWVDEFLDFSAARRGAHRRSVSDSVAFLEAPMLDHHCKSRGSDGGGDNESEFERFDDEQFMSMFSDEASGNNNSNNNDNDNNNNINYYHSNNNTMMALTVSCSNPSTPSDHNSINDEKEMMNKEKEEEQEKKQVKNESDEDESQCKQEITQNPDDCNNSNANAATCSSEKITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQVYHQQNIKKMDNAAGSTSQSPLPSPKPRCDTLTEKEQLINV 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3459g00005 347 CDD bZIP_plant_RF2 216 266 IPR044759 GO:0003700|GO:0006355
Vium3459g00005 347 Coils Coil 294 314 - -
Vium3459g00005 347 MobiDBLite consensus disorder prediction 314 347 - -
Vium3459g00005 347 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 218 233 IPR004827 GO:0003700|GO:0006355
Vium3459g00005 347 MobiDBLite consensus disorder prediction 314 332 - -
Vium3459g00005 347 MobiDBLite consensus disorder prediction 160 202 - -
Vium3459g00005 347 MobiDBLite consensus disorder prediction 160 188 - -
Vium3459g00005 347 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 213 265 IPR004827 GO:0003700|GO:0006355
Vium3459g00005 347 SUPERFAMILY Leucine zipper domain 215 269 IPR046347 GO:0003700|GO:0006355
Vium3459g00005 347 PANTHER BASIC LEUCINE ZIPPER 34 1 332 - -
Vium3459g00005 347 Gene3D - 214 285 - -
Vium3459g00005 347 FunFam Basic leucine zipper 61 214 287 - -
Vium3459g00005 347 SMART brlzneu 211 275 IPR004827 GO:0003700|GO:0006355
Vium3459g00005 347 MobiDBLite consensus disorder prediction 105 129 - -
Vium3459g00005 347 Pfam bZIP transcription factor 215 259 IPR004827 GO:0003700|GO:0006355
Vium3459g00005 347 Coils Coil 151 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3459g00005 Vium-Chr3459 108444 111467 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3459g00005 1 292 bZIP Transcription Factor Family AT3G58120 57.742 2.99e-102 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium3459g00005 bZIP_2 4.2e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3459g00005 - - gmx:778128 504.597