Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3459g00002 ATGGATATCTTCCGCAATGATCAAGAACACGACCTCCCATATGTTCCAAACAGTGACGATTCAGACAACGGCACCAACGAAAACAAAAAGATACTCTACATATCCATGGTTTCCTTCACGCTTGTCTTGTTCCTCGTCTTCTCCCTCTACGTCTACGCGCGCTGCATGCTCACGCGCCGATCTCGCCACCGTGCCTCCGTTCGCCGACTCAACCTTGCAGCCCTTCATGTCTCCGACATGGACGCTGCAAACCGCAGGATCGAACCAGCAAATACAGGACTCGATCCTGGCATAGTAGCGTCGCTGCCAACGTTCACCGTGAAGGCAAAGGTTTTAAGAGATAGTAGTGGTGGTGATAATAATAACAGTGGCGGTGGTGGTGATGCTTCATCGGTAATGGAGTGTGTTGTATGCTTGAATGTTCTGGAAAGCGAAGAAAAAGTGAAGCTGCTACCGAACTGTAACCACTTTTTTCATGTGAGTTGTATTGACATGTGGCTTGGTTCTCACTCTACGTGCCCTCTTTGTCGGTCCGAGGTTAAACCTCGGATCCAACCACATGATCGTGAAGGTCCTGTTAGTCTTGCTCTTGATGATGCACCACCTCCTATGATTGATGATGGTGTTGGTAATGGTGAATCTTTCAAAGGTAATGGTTCGAATTCACGGTTGAGCTCTTTCAGAAGGATGCTTAGCAGGGAAAGATCTTCCAGAAGAGTCCAACCAAATGGTCATGATGAGGATGATGGTGTTGATCATGATTTGGAGAGACAATGA 777 0.4749 MDIFRNDQEHDLPYVPNSDDSDNGTNENKKILYISMVSFTLVLFLVFSLYVYARCMLTRRSRHRASVRRLNLAALHVSDMDAANRRIEPANTGLDPGIVASLPTFTVKAKVLRDSSGGDNNNSGGGGDASSVMECVVCLNVLESEEKVKLLPNCNHFFHVSCIDMWLGSHSTCPLCRSEVKPRIQPHDREGPVSLALDDAPPPMIDDGVGNGESFKGNGSNSRLSSFRRMLSRERSSRRVQPNGHDEDDGVDHDLERQ 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3459g00002 258 CDD RING-H2_EL5-like 134 177 - -
Vium3459g00002 258 MobiDBLite consensus disorder prediction 228 258 - -
Vium3459g00002 258 MobiDBLite consensus disorder prediction 184 258 - -
Vium3459g00002 258 Pfam Ring finger domain 134 177 IPR001841 -
Vium3459g00002 258 SUPERFAMILY RING/U-box 134 184 - -
Vium3459g00002 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 184 IPR013083 -
Vium3459g00002 258 PANTHER RING-H2 FINGER PROTEIN ATL16 16 182 IPR044600 GO:0016567|GO:0016740
Vium3459g00002 258 ProSiteProfiles Zinc finger RING-type profile. 135 177 IPR001841 -
Vium3459g00002 258 SMART ring_2 135 176 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3459g00002 Vium-Chr3459 42870 45043 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3459g00002 28 258 C3H Transcription Factor Family AT2G42360 38.655 5.72e-45 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3459g00002 K19038 - gmx:100783358 279.256