Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3459g00001 AAAAAAAAAAAACTGGATTTCAGTGGGAATCAGTATCATCCACCAAGTCCTATACAAAGTCCACATGACTCACAACAACAAAACTTGATCAGCACACACACAGCTCATTATCAGGTATCTCAAAACCAACCTTCATATGTTGTAGGTATAGGAAGAAGTTCCCACGGAATAGAACCATCTACTTTGGACCAAGCCATAAAACACAGGAAGCATAATAGAGAAGGAACATTCACAAGGGTCATGAGGAGCAGTGTAGGAGATATTGTTCAAGTGGAAGGAGGACACATTGTTAGGTCCACGGGTAGAAAAGATCGCCACAGCAAGGTCTATACTTCCAAAGGGCCTCGTGATCGCCGGGTTAGACTCTCAGCACACACAGCCATTGAGTTCTATGACGTTCAAGACAGACTTGGCTATGACAGACCAAGCAAGGCTGTGGACTGGCTCATCAAGAAGGCAAAGTCTTCCATTGACAAGCTTGCTGAGCTTCCTCCATGGCATCCACCTATTCATGAGGAAAAGCAGAATGATGCTGCAGGATCAAGTGGAATCATGGCCGTTGAACAACAACAAGAAGAACCTCATCAACAACAGTCAGAGTCTTGTGGCTACAACTTTCAGCTCCATAGGCAACTGGGGGCCTTTATTTCTACCCATGTTGACACTGACCCCATCAATTTTCAAACCAACAACAACTCAGAAGATCTTGGCCTATCTCTCCACTGTTTCCAAGACCACCCTGGCCTTATTAACTGGCCATCGCAACAAGGTGCAAATCAAGCACCTCCTTCAAATGAGCACCAAATTCAAACCCTTTTTGCTGGCTCAACCCCAGTTTCGTTTGAGAACCATTATCAAAGAACTGTGACTTGGAACAATGAAGCAACAACCGGGGATCATGTGAGCAGAATGGGATTCTTTCTCAACTCACAGCCATTTATAGGCCAAGGTTCTGCTTCAGCTTATGCTCAAAGTGAGACCCTTCAGTCCAGTTTTTCATTTCCAATGACTTCCTCTGAGCATCAGAGGCCCCAACCAGTTCACCAACCTTCCATCTTTGGCAGCAGGTTTGCTGTCTCTGATGGATTAACCGGTTTCTGCATTCCAGATAGAATTCAAGATGTGGAAGAGAACCATGGAGATGCTTCCAATAGGCCATCTTCTTCTCCTAGTTCTATCCACTGA 1185 0.4498 KKKKLDFSGNQYHPPSPIQSPHDSQQQNLISTHTAHYQVSQNQPSYVVGIGRSSHGIEPSTLDQAIKHRKHNREGTFTRVMRSSVGDIVQVEGGHIVRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIEFYDVQDRLGYDRPSKAVDWLIKKAKSSIDKLAELPPWHPPIHEEKQNDAAGSSGIMAVEQQQEEPHQQQSESCGYNFQLHRQLGAFISTHVDTDPINFQTNNNSEDLGLSLHCFQDHPGLINWPSQQGANQAPPSNEHQIQTLFAGSTPVSFENHYQRTVTWNNEATTGDHVSRMGFFLNSQPFIGQGSASAYAQSETLQSSFSFPMTSSEHQRPQPVHQPSIFGSRFAVSDGLTGFCIPDRIQDVEENHGDASNRPSSSPSSIH 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3459g00001 394 MobiDBLite consensus disorder prediction 1 26 - -
Vium3459g00001 394 MobiDBLite consensus disorder prediction 162 182 - -
Vium3459g00001 394 MobiDBLite consensus disorder prediction 12 26 - -
Vium3459g00001 394 Pfam TCP family transcription factor 101 197 IPR017887 -
Vium3459g00001 394 ProSiteProfiles TCP domain profile. 102 160 IPR017887 -
Vium3459g00001 394 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 46 349 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3459g00001 Vium-Chr3459 25190 26979 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3459g00001 85 391 TCP Transcription Factor Family AT1G53230 35.620 2.13e-47 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vium3459g00001 TCP 3.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3459g00001 - - vum:124834546 791.186