Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3454g00001 ATGGTGCTGCTCAGATGTTTCTCAATGACACTTTTGCAATGGTGTTTTTTGGCTTGCTTAGTTTGCTTGTCACTAGGGTTTAATAATAATCAAGCCCCCTGTGACCCTCATGATTTATCAGCTCTGAAGAAGTTTGCAGGAAAACTTACAAGTGGCTCTATCATCGCAGCATGGTCCAATGACTCTGTCTGCTGCAACTGGTGTGGAGTTGTTTGTGACAATGTGACTGGAGGTGGTGGAACAGTTACGAGTAGAGTGACCAAGTTGATCCTGCCTGAAATGGGTCTCAATGGTACAATTTCAGCCTCTTTAGCACAGCTAGATCAGCTCAGTGTGCTGAATCTTTCATTAAATCACCTTAAAGGTGGATTGCCTGTGGAGTTCTCCCAGTTGAAGCTGTTGAAGTTCCTTGATGTGAGCCATAATATGCTGTCTGGACCTGTTGCTGGAACTCTTTCTGGTCTGCAATCCATTGAAGTATTGAATATTTCTAGCAATTCACTTTCTGGAGTTCTCTTCCCTTTTGGGGAGTTCCCTCGTCTCCTTGCTCTCAACGTGAGCAACAATTCATTCACTGGCGGCTTCAATTCACAAATTTGCAGTGCTACCAAAGAACTTCACACCCTTGATTTGTCAGCAAATAATTTTATTGGTGGTCTTGAAGGCTTGGACAACTGCACCACATCTCTCCAACGGCTGCATTTGGATTCCAATTCATTTACTGGCCCTCTTCCAGATTCCTTGTATTCAATGTCAGCCTTGGAGGAGCTCTCAGTCTCTTCCAACAATATTTCTGGCCAGTTAAGCAAGCAACTAAGTAAGCTCTCTAACCTAAAAATTCTGGTGCTTTGTGGAAACAGGTTTTCTGGGGAACTTCCAGATGTATTTGGGAATCTTTTGCAGCTAGAAGAATTAGAAGCTCATGGCAATTCATTTTCTGGACCCTTGCCCTCCACCTTGGCTTCATGCTTTAAGCTCAGGGTGCTTAACCTCCGAAATAATTCCTTTTCAGGGCCTATTGGGCTTAATTTCACTGGCTTGTCTTATCTTCAAACACTCGACCTTGCTACTAATCATTTCACTGGACACCTTCCAACTTCCCTGTCCTTTTGTCGTGAATTGAAGGTTTTAAGCCTTGCTAGGAATGGCTTAACTGGCTCTATCCCTGAAAACTATGCAAACCTAAGCTCACTTTTGTTTGTATCCTTTTCAAACAACAGCATTGAGAACTTATCTCGGGCAGTATCTGTTTTGCAGCAGTGCAAAAATCTCACCACTCTTATCCTCACCAAGAATTTCCATGGTGAGGAAATTCGGGAAAGTACCATAGTAGGATTTGAGAGCCTTATGATTTTAGCACTTGGAAATTGTGGTCTTAAAGGTCACATTCCTTCTTGGTTATCCAATTGCAGGAAGTTGGCAGTTCTTGACTTGTCTTGGAACCGTTTGAATGGAAGTGTTCCTTCTTGGATTGGTCAGATGGACAGTTTGTTCTATATGGATTTCTCGAATAATTCTCTCACAGGAGAAATACCGAAAAGTTTGACAGAGTTGAAGGGCCTCATGTGTGCAAACTGTAATAGAGAAAATCTTGCTGCTTTTGCATTCATTCCTCTCTTTGTTAAGAGAAACACAAGTGCAAGTGGACTGCAATATAACCAGGCCTCAAGCTTCCCTCCTTCAATTTACTTGAGCAATAACATATTGAGTGGAAATATATGGCCCGAAATTGGTCAATTGAAAGCACTACATGTCTTGGATTTAAGCAGGAACAACATCACTGGTACCATTCCTAGCACTATTTCACAGATGGAGAACTTGGAAACCTTAGATTTGTCTTATAATGATCTTACTGGAGAAATTCCTTCATCATTTAACAACCTAACTTTCTTGTCAAAGTTCAGTGTGGCATATAATCGGTTAGAGGGATCAATTCCAACTGGGAATCAATTTTTAGGCTTCCCAAGTTCAAGCTTTGAGGGAAACCAGGGGCTTTGTAGGGAAATTGATTCTCCTTGCAAAATTGTCAACAATACTAAGCCCATCAGTTCTTCCGGTTCTTCCAAAAAGCTTGGTAGAAGCAATGTCCTTGGCATAACTATAAGTATAGGGATAGGGCTTGCACTGCTTCTTGCATTTATTTTGCTAAGAATGTCAAGGAGGGATGATGATAAGCCCATCGACAACTATGATGAGGAACTCAATAGCAGGCCACACAGGTTATCCGAGGCACTTGTTTCCTCAAAGTTGGTTCTTTTCCAGAATTCAGATTGCAAGGATCTTACAGTTGCAGATTTGTTAAAATCCACAAACAATTTCAACCAGGCAAATATTATTGGTTGTGGTGGGTTTGGTCTTGTCTACAAGGCATATCTTCCAAATGGTACAAAAGCAGCTATCAAGAGACTTTCAGGTGACTGTGGTCAGATGGAACGTGAATTCCAAGCTGAAGTAGAGGCCCTCTCAAGAGCTCAACACAAGAACCTTGTTTCTCTGAAAGGATATTGTCGGCATGGCAATGACAGACTGTTAATATACTCGTACTTGGAGAATGGAAGCTTGGATTATTGGCTGCATGAGTGTGTGGATGAAAGCGCAGCTCTAAAATGGGATGCAAGACTGAAGATTGCACAAGGTGCGGCACGTGGATTAGCTTACTTGCATAAGGGTTGTGAACCATTCATAGTGCATCGTGATGTTAAATCCAGCAACATTCTTTTGGATGACAAGTTTGAAGCTCATTTGGCTGATTTTGGTCTCTCACGACTACTTCAACCATATGACACTCATGTGACAACTGACTTGGTAGGAACTTTAGGATATATTCCTCCAGAATATAGTCAGACACTGACAGCAACCTTCAGGGGTGATGTTTATAGTTTTGGTGTTGTTCTTCTTGAGCTTCTAACAGCTAGAAGACCTGTGGAAGTCATCAAGGGGAAAAATTGCAGAAATCTGGTTTCTTGGGTGTTCCAGATGAAATCTGAGAATAAGGAGCAGGAAATTTTTGATCCAGCAATTTGGCATAAGGATCATGAGAAACAGCTACTAGAGGTGCTTGCCATTGCTTGTAAATGTCTAGACCAAGATCCTAGGCAGAGACCCGCTATTGAAGTAGTTGTTTCATGGCTTGATAGTGTAAGATTTGATGGTTCTCAACAGTGA 3165 0.4177 MVLLRCFSMTLLQWCFLACLVCLSLGFNNNQAPCDPHDLSALKKFAGKLTSGSIIAAWSNDSVCCNWCGVVCDNVTGGGGTVTSRVTKLILPEMGLNGTISASLAQLDQLSVLNLSLNHLKGGLPVEFSQLKLLKFLDVSHNMLSGPVAGTLSGLQSIEVLNISSNSLSGVLFPFGEFPRLLALNVSNNSFTGGFNSQICSATKELHTLDLSANNFIGGLEGLDNCTTSLQRLHLDSNSFTGPLPDSLYSMSALEELSVSSNNISGQLSKQLSKLSNLKILVLCGNRFSGELPDVFGNLLQLEELEAHGNSFSGPLPSTLASCFKLRVLNLRNNSFSGPIGLNFTGLSYLQTLDLATNHFTGHLPTSLSFCRELKVLSLARNGLTGSIPENYANLSSLLFVSFSNNSIENLSRAVSVLQQCKNLTTLILTKNFHGEEIRESTIVGFESLMILALGNCGLKGHIPSWLSNCRKLAVLDLSWNRLNGSVPSWIGQMDSLFYMDFSNNSLTGEIPKSLTELKGLMCANCNRENLAAFAFIPLFVKRNTSASGLQYNQASSFPPSIYLSNNILSGNIWPEIGQLKALHVLDLSRNNITGTIPSTISQMENLETLDLSYNDLTGEIPSSFNNLTFLSKFSVAYNRLEGSIPTGNQFLGFPSSSFEGNQGLCREIDSPCKIVNNTKPISSSGSSKKLGRSNVLGITISIGIGLALLLAFILLRMSRRDDDKPIDNYDEELNSRPHRLSEALVSSKLVLFQNSDCKDLTVADLLKSTNNFNQANIIGCGGFGLVYKAYLPNGTKAAIKRLSGDCGQMEREFQAEVEALSRAQHKNLVSLKGYCRHGNDRLLIYSYLENGSLDYWLHECVDESAALKWDARLKIAQGAARGLAYLHKGCEPFIVHRDVKSSNILLDDKFEAHLADFGLSRLLQPYDTHVTTDLVGTLGYIPPEYSQTLTATFRGDVYSFGVVLLELLTARRPVEVIKGKNCRNLVSWVFQMKSENKEQEIFDPAIWHKDHEKQLLEVLAIACKCLDQDPRQRPAIEVVVSWLDSVRFDGSQQ 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3454g00001 1054 Gene3D Ribonuclease Inhibitor 201 369 IPR032675 -
Vium3454g00001 1054 FunFam Phytosulfokine receptor 1 736 848 - -
Vium3454g00001 1054 Gene3D Ribonuclease Inhibitor 35 200 IPR032675 -
Vium3454g00001 1054 ProSiteProfiles Protein kinase domain profile. 773 1049 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3454g00001 1054 Gene3D Phosphorylase Kinase; domain 1 736 848 - -
Vium3454g00001 1054 SMART LRR_typ_2 580 603 IPR003591 -
Vium3454g00001 1054 SMART LRR_typ_2 347 371 IPR003591 -
Vium3454g00001 1054 SMART LRR_typ_2 251 274 IPR003591 -
Vium3454g00001 1054 SMART LRR_typ_2 275 298 IPR003591 -
Vium3454g00001 1054 SMART LRR_typ_2 107 130 IPR003591 -
Vium3454g00001 1054 SMART LRR_typ_2 131 154 IPR003591 -
Vium3454g00001 1054 SMART LRR_typ_2 395 418 IPR003591 -
Vium3454g00001 1054 SMART LRR_typ_2 604 627 IPR003591 -
Vium3454g00001 1054 SUPERFAMILY RNI-like 228 527 - -
Vium3454g00001 1054 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 251 1045 - -
Vium3454g00001 1054 FunFam Leucine-rich repeat receptor-like protein kinase 849 1054 - -
Vium3454g00001 1054 SUPERFAMILY Protein kinase-like (PK-like) 755 1044 IPR011009 -
Vium3454g00001 1054 ProSiteProfiles Leucine-rich repeat profile. 606 628 IPR001611 GO:0005515
Vium3454g00001 1054 Pfam Protein kinase domain 774 1041 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3454g00001 1054 Pfam Leucine rich repeat N-terminal domain 36 73 IPR013210 -
Vium3454g00001 1054 SUPERFAMILY L domain-like 33 314 - -
Vium3454g00001 1054 ProSitePatterns Protein kinases ATP-binding region signature. 779 801 IPR017441 GO:0005524
Vium3454g00001 1054 Gene3D Ribonuclease Inhibitor 370 680 IPR032675 -
Vium3454g00001 1054 FunFam Tyrosine-sulfated glycopeptide receptor 1 344 678 - -
Vium3454g00001 1054 PRINTS Leucine-rich repeat signature 604 617 - -
Vium3454g00001 1054 PRINTS Leucine-rich repeat signature 583 596 - -
Vium3454g00001 1054 ProSiteProfiles Leucine-rich repeat profile. 205 227 IPR001611 GO:0005515
Vium3454g00001 1054 CDD STKc_IRAK 779 1045 - -
Vium3454g00001 1054 Pfam Leucine rich repeat 229 288 IPR001611 GO:0005515
Vium3454g00001 1054 Pfam Leucine rich repeat 582 641 IPR001611 GO:0005515
Vium3454g00001 1054 Pfam Leucine rich repeat 423 483 IPR001611 GO:0005515
Vium3454g00001 1054 Gene3D Transferase(Phosphotransferase) domain 1 849 1053 - -
Vium3454g00001 1054 ProSitePatterns Serine/Threonine protein kinases active-site signature. 895 907 IPR008271 GO:0004672|GO:0006468
Vium3454g00001 1054 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 245 340 - -
Vium3454g00001 1054 FunFam Leucine-rich repeat receptor-like kinase 37 156 - -
Vium3454g00001 1054 SUPERFAMILY L domain-like 550 674 - -
Vium3454g00001 1054 SMART serkin_6 773 1044 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3454g00001 Vium-Chr3454 31033 35519 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3454g00001 39 1054 Receptor kinase-like Gene Family AT1G55610 34.012 7.53e-163 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Vium3454g00001 Pkinase 2.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3454g00001 - - gmx:100797812 1828.91