Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3443g00002 ATGCAGGACGCAACAATGGTGGTGCCTCCATGGTTCGAGCCGCTCCTCACCACATCGTTTTTCAATGTGTGTCGCGTTCATGGAGATGCTGCGAGAAGCGAATGTAACATGTTTTGTTTGGATTGTAACGAGGATGCGTTTTGCTTCTATTGCCGATCCTCGCGACACAAAGATCACCGAGTGATTCAGATAAGGCGATCTTCTTATCACGATGTGGTGAGGGTGTCGGAAATTCAGAAGGTGTTGGACATCAGTGGAGTGCAAACGTATGTGATTAACAGTGCCAGAGTATTGTTTCTGAACGAGAGGCCTCAACCCAAGTCAGGGAAAGGCGTTGCTCACATTTGTGAGATTTGTGGAAGAAGCCTCTTGGACCCATTTCGGTTCTGTTCTTTGGGGTGTAAGCTTGTGGGAATAAAGAGAAATGGGGATGCAAGGTTTGGTGGTTTGGATTCTAAAAACGAGACAGCAACAATGGAGGGCATGTCAAGGAGATTGGTTTCTTCAAGGCATCACCAAGAAGAAGAATTGCGTGAAGGCTCACAACAAGACATGTACCCGGCCACGCCTTCTCCACCTGCTTCAAACGCAAGGCGAAGAAAAGGCATTCCTCACAGGGCACCTTTTGCCTCCTAA 636 0.4796 MQDATMVVPPWFEPLLTTSFFNVCRVHGDAARSECNMFCLDCNEDAFCFYCRSSRHKDHRVIQIRRSSYHDVVRVSEIQKVLDISGVQTYVINSARVLFLNERPQPKSGKGVAHICEICGRSLLDPFRFCSLGCKLVGIKRNGDARFGGLDSKNETATMEGMSRRLVSSRHHQEEELREGSQQDMYPATPSPPASNARRRKGIPHRAPFAS 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3443g00002 211 Pfam PLATZ transcription factor 65 136 IPR006734 -
Vium3443g00002 211 SUPERFAMILY B-box zinc-binding domain 22 66 - -
Vium3443g00002 211 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 5 209 - -
Vium3443g00002 211 MobiDBLite consensus disorder prediction 158 211 - -
Vium3443g00002 211 MobiDBLite consensus disorder prediction 165 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3443g00002 Vium-Chr3443 12611 14605 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Vium3443g00002 PLATZ 1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3443g00002 - - gmx:100809455 400.208