Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3443g00001 ATGGACGCAACAATGGTGGTGCCTCCATGGTTCGAGCCGCTCCTCACCACATCGTTTTTCAATGTGTGTCGCGTTCATGGAGATGCTGCGAGAAGCGAATGTAACATGTTTTGTTTGGATTGTAACGAGGATGCGTTTTGCTTCTATTGCCGATCCTCGCGACACAAAGATCACCGAGTGATTCAGATAAGGCGATCTTCTTATCACGATGTGGTGAGGGTGTCGGAAATTCAGAAGGTGTTGGACATCAGTGGAGTGCAAACGTATGTGATTAACAGTGCCAGAGTATTGTTTCTGAACGAGAGGCCTCAACCCAAGTCAGGGAAAGGCGTTGCTCACATTTGTGAGATTTGTGGAAGAAGCCTCTTGGACCCATTTCGGTTCTGTTCTTTGGGGTGTAAGCTTGTGGGAATAAAGAGAAATGGGGATGCAAGGTTTGGTGGTTTGGATTCTAAAAACGAGACAGCAACAATGGAGGGCATGTCAAGGAGATTGGTTTCTTCAAGGCATCACCAAGAAGAAGAATTGCGTGAAGGCTCACAACAAGACATGTACCCGGCCACGCCTTCTCCACCTGCTTCAAACGCAAGGCGAAGAAAAGGCATTCCTCACAGGGCACCTTTTGCCTCCTAA 633 0.4787 MDATMVVPPWFEPLLTTSFFNVCRVHGDAARSECNMFCLDCNEDAFCFYCRSSRHKDHRVIQIRRSSYHDVVRVSEIQKVLDISGVQTYVINSARVLFLNERPQPKSGKGVAHICEICGRSLLDPFRFCSLGCKLVGIKRNGDARFGGLDSKNETATMEGMSRRLVSSRHHQEEELREGSQQDMYPATPSPPASNARRRKGIPHRAPFAS 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3443g00001 210 SUPERFAMILY B-box zinc-binding domain 21 65 - -
Vium3443g00001 210 MobiDBLite consensus disorder prediction 164 180 - -
Vium3443g00001 210 Pfam PLATZ transcription factor 64 135 IPR006734 -
Vium3443g00001 210 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 5 208 - -
Vium3443g00001 210 MobiDBLite consensus disorder prediction 157 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3443g00001 Vium-Chr3443 12610 14605 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Vium3443g00001 PLATZ 1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3443g00001 - - gmx:100809455 400.208