Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3440g00003 ATGGCTTTGGGAGTGTTCGGTTCTGTTCTAGTTCTGACACTCTTCTTCAAGCACTTATCATCCCAGCAACCAAACACTGATGATTTCTTTGTGTCTGAGTTCTTGAAGAAGATGGGCTTAGCATCCTCCCAGGTCTACAACTTTTCTGATTCTGTCTGTTCATTTCGAGGGGTTTCATGTGATGCCAAGAAAGAACATGTTATTGGGTTAGTCTTTTCTGGCATGGACCTTTCTGGTCCCATTCCAGACACCACCATAGGTAAGCTCACCAAGCTTCGATCTTTGGACCTTAGCCACAACAAAATCACCGACTTGTCTCCTGATTTCTGGAGTTTTAGCTTGCTCAACAACCTTAACCTCTCCGGCAATAAGATTTCTGGTTCATTGACTAACAACATAGGAAACTTTGGTTTGCTGGAAGTATTGGACTTGTCCAGCAACAATTTCTCTGGGCCAATTCCTGAAGCTATCAGTTCCCTCGTGAGTCTGAAAGTCATCAAACTTGACCACAACAGGTTTGAGCAAAGAATACCTTCTGGGATTCTTAAGTGTCGTTCTCTTGTTTCAATTGATCTTTCTTCAAATCAGCTAAGTGGGACAGTTCCGGATGATTTTGGTGCTTCTTTTCCTAATCTCGTTACCTTGAACCTTGCTGGGAATAGTATTAATGGCAGTGATTCTGATATTTCTGGGTTGAAGTCCATTGTGAGTCTGAATATATCTGGAAATTCCTTTCAGGGTTCTGTGATGAAGTTATTTCAGGGAAGGCTTGAGGTCATGGATCTTAGAAGAAACCAATTTGAAGGTCGCATTTCTCAGGTACATTCCATCTCTAATTACAATTGGTCTTATTTAGTTTATCTGGATTTGTCAGAGAATCTGCTGGATGGAGAAATTTCCCAAAATTTGATTGAATACAAGAACCTAAAACACCTTAATATTGCCCACAATAGATTTAGCAGACAGAAATTCCCCAAGGTTGAAATGCTATCTGGATTGGAATATCTGAACTTGTCCAAAACTAGTCTCATTGGTTACATTCCTGCTAAAATCTCCCAACTTCGAAATTTGAGTACACTTGATGTTTCTATGAATCATCTAACAGGGAAAATCCCTTCACTAAAAAATAGAAACCTCCGAGTTCTTGACCTTTCAAACAACAATCTGAGTGGAGATATCCCATCATCAGTCATAGAGAAACTTCCTTCAATGCAGAAATACAACTTCTCTTATAATAACTTATCCTTCTGTGCTTTGGTAATCAAATCAGCCATCATCCAAAGAGCATTCTATGGATCAGTGAACAGTTGCCCCATTGCTGCAAACCCAAGTCTTCTGAAAAAAAGAGCCACTGAAAATAAGGGAATGAAGCTAGCTCTAGCATTGACCTTCTCAATGATCTGCTTGATTGCTGGGCTTATGCTTCTAGCTTTTCGTTGCCATAAGAAAACAAAACCATGGCCTGTTAAACAAACTTCATACAATGAAGTGCATAACATGTCAGGTCCCTTTTCATTCCACACTGATTCAACAACATGGGTGGCTGATGTTAAGCAAGCAACATCAGTCCCAGTAGTAATCTTTGACAAGCCACTATTAAATATCACATTTGCAGACCTCTTGGCTGCAACTTCAAATTTTGATAGGGGTACCCTTTTGGCTGAAGGGAAATTCGGGCCAGTTTATAGAGGATTTCTACCAGGTGGTATTCACGTAGCAGTAAAAGTTCTGGTGGTTGGATCCACTCTTACGGATAAAGAAGCTGCAAGAGAACTTGAGTATCTTGGAAGAATAAAGCATCCCAATCTTGTTCCTCTAACAGGATATTGTGTAGCTGGGGATCAGAGAATTGCTATATATGACTACATGGAGAATGGAAACTTGCAAAATTTGCTCTATGACTTGCCACTTGGTGTACTTCAAAATACAGATGACTGGAGCACAGATACATGGGAAGAAGATGCGAGTAATGGGATTGAAAATTCTGGATCAGAAGGAGGTCTCACAACTTGGAGATTTCGCCATAAAATCGCACTTGGCACTGCTCGAGCATTGGCATTTCTGCATCATGGATGCTCCCCACCAATCATTCACAGAGATGTTAAAGCTAGCAGTGTATATTTGGATTACAACTTAGAGCCAAGACTCTCTGATTTTGGGCTGGCTAAGATTTTTGGGAGTGGCTTGGATGAAGAGAGTGCACTTTGTTCACCTGGCTATGTTCCACCAGAGTTTTCTCAACAAGAATTTTGTACCTCAACTCCAAAATCTGATGTGTATTGCTTTGGGGTTGTTCTCTTTGAGCTGCTATCTGGGAAGAAACCGGTTGCAGATGATTATCCTGATGTAAAGGAAGCAACTTTGGTTAGCTGGGTGAGAGGGTTAGTGAGAGAGAACAGAGGTTCAAGAGCCATTGATCCAAAAATTCGTTATACTGGAGCAGAAGAGCAAATGGAAGAAGCCCTTAAGATTGGTTATCTCTGCACTGCCGATCTTCCTTCCAAGCGACCCAGCATGCAGCAGGTACTTGGACTTCTTAAAGACATCGAACCTTCTAATTAG 2562 0.4106 MALGVFGSVLVLTLFFKHLSSQQPNTDDFFVSEFLKKMGLASSQVYNFSDSVCSFRGVSCDAKKEHVIGLVFSGMDLSGPIPDTTIGKLTKLRSLDLSHNKITDLSPDFWSFSLLNNLNLSGNKISGSLTNNIGNFGLLEVLDLSSNNFSGPIPEAISSLVSLKVIKLDHNRFEQRIPSGILKCRSLVSIDLSSNQLSGTVPDDFGASFPNLVTLNLAGNSINGSDSDISGLKSIVSLNISGNSFQGSVMKLFQGRLEVMDLRRNQFEGRISQVHSISNYNWSYLVYLDLSENLLDGEISQNLIEYKNLKHLNIAHNRFSRQKFPKVEMLSGLEYLNLSKTSLIGYIPAKISQLRNLSTLDVSMNHLTGKIPSLKNRNLRVLDLSNNNLSGDIPSSVIEKLPSMQKYNFSYNNLSFCALVIKSAIIQRAFYGSVNSCPIAANPSLLKKRATENKGMKLALALTFSMICLIAGLMLLAFRCHKKTKPWPVKQTSYNEVHNMSGPFSFHTDSTTWVADVKQATSVPVVIFDKPLLNITFADLLAATSNFDRGTLLAEGKFGPVYRGFLPGGIHVAVKVLVVGSTLTDKEAARELEYLGRIKHPNLVPLTGYCVAGDQRIAIYDYMENGNLQNLLYDLPLGVLQNTDDWSTDTWEEDASNGIENSGSEGGLTTWRFRHKIALGTARALAFLHHGCSPPIIHRDVKASSVYLDYNLEPRLSDFGLAKIFGSGLDEESALCSPGYVPPEFSQQEFCTSTPKSDVYCFGVVLFELLSGKKPVADDYPDVKEATLVSWVRGLVRENRGSRAIDPKIRYTGAEEQMEEALKIGYLCTADLPSKRPSMQQVLGLLKDIEPSN 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3440g00003 853 Gene3D Phosphorylase Kinase; domain 1 507 622 - -
Vium3440g00003 853 Pfam Protein tyrosine and serine/threonine kinase 551 843 IPR001245 GO:0004672|GO:0006468
Vium3440g00003 853 Gene3D Ribonuclease Inhibitor 253 325 IPR032675 -
Vium3440g00003 853 SUPERFAMILY L domain-like 42 281 - -
Vium3440g00003 853 PRINTS Leucine-rich repeat signature 354 367 - -
Vium3440g00003 853 PRINTS Leucine-rich repeat signature 92 105 - -
Vium3440g00003 853 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 280 849 - -
Vium3440g00003 853 Gene3D Ribonuclease Inhibitor 179 252 IPR032675 -
Vium3440g00003 853 ProSiteProfiles Protein kinase domain profile. 547 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3440g00003 853 ProSiteProfiles Leucine-rich repeat profile. 91 112 IPR001611 GO:0005515
Vium3440g00003 853 SUPERFAMILY Protein kinase-like (PK-like) 532 846 IPR011009 -
Vium3440g00003 853 Gene3D Transferase(Phosphotransferase) domain 1 649 853 - -
Vium3440g00003 853 Gene3D Ribonuclease Inhibitor 326 423 IPR032675 -
Vium3440g00003 853 Gene3D Ribonuclease Inhibitor 30 178 IPR032675 -
Vium3440g00003 853 Pfam Leucine rich repeat 81 125 IPR001611 GO:0005515
Vium3440g00003 853 Pfam Leucine rich repeat 185 244 IPR001611 GO:0005515
Vium3440g00003 853 FunFam Calmodulin-binding receptor kinase CaMRLK 255 374 - -
Vium3440g00003 853 Pfam Leucine Rich Repeat 139 160 IPR001611 GO:0005515
Vium3440g00003 853 Pfam Leucine Rich Repeat 378 396 IPR001611 GO:0005515
Vium3440g00003 853 FunFam Putative LRR receptor-like serine/threonine-protein kinase 508 622 - -
Vium3440g00003 853 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 106 201 - -
Vium3440g00003 853 SUPERFAMILY L domain-like 229 415 - -
Vium3440g00003 853 ProSiteProfiles Leucine-rich repeat profile. 378 400 IPR001611 GO:0005515
Vium3440g00003 853 SMART LRR_typ_2 89 111 IPR003591 -
Vium3440g00003 853 SMART LRR_typ_2 377 400 IPR003591 -
Vium3440g00003 853 SMART LRR_typ_2 209 232 IPR003591 -
Vium3440g00003 853 SMART LRR_typ_2 160 184 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3440g00003 Vium-Chr3440 32084 37176 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3440g00003 77 850 Receptor kinase-like Gene Family AT1G55610 33.498 2.91e-108 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Vium3440g00003 PK_Tyr_Ser-Thr 3.3e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3440g00003 - - gmx:100807051 1467.21