Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium343g00004 ATGGAAGAGAGTGTAGTTACCTTTGTTTTAGATCATTTAGCCCAGCTTGTGGCACGCGAAGCTAACTTGCTGTATGGCGTGGAGGACAGGGTCCAGTCCCTCCAGAACGAACTTCAAATGATCAAAGACCTCCTCAATACCACAAAGAGAAAGAAGGGAATGGAACATACTGTATTGAATCAAATCAGAGATGTGGCCCACGTAGCTGAGGATGTCATCGATACATTCGTAGCCAAAGTTGCAATTTACAAGAGAAGAACCATTCTGGGGAGGATGCTCCGTGGCTTTGGCCAATTAAGGTTGTTCCACCACGTAGCCGAAAAAATAGACACGATCAAAGCCACTCTCAACGACATACGCGACAACAAGGACAAATATGATGCTTTCAAAGAAACCAATAATCAATCCGCAGCAGATCTAGAGGCGGAGGAGGAGAAAAGGGCGCAATCACTGCACATTCTAAGAAGAAATGTGGAGGAAGAAGATGTAGTTGGCTTTATCCATGACTCCAAGGATGTCATCAACCTACTCCTGGAAGGTGGTTCAAATCGTAAAGCTGTCTCTATTGTTGGCATGGGGGGATTGGGAAAGACCACCCTTGCCCGAAAGGTCTATAATAGCAGCCAGGTGATGAACCACTTCGATTGTCGTGCGTGGGTTTATGTCTCAAACGAGTGCAGAGTTAAGGATCTTTTGATTGGCCTTTTTAAGCATTTGATGCCAAATTTTGAACAGCAACAACCTAGAGGCAACAAAAGAGGTAAGAAAAGCGCAGGAGACATTAACGACCTTAGTGAGGAGGAACTGAAGAAATTGGTGCGAAACTGCTTGGAGTGGAAAAAGTATCTTGTGGTGGTAGATGACCTGTGGAAAAAGCAAGATTGGGACGAGGTGCTAGATGCTTTTCCGGACAACAACAGAGGCAGCAGAATATTGATCACTAGTCGTTTGAAAGAGGTGGCCTTGCATGCTGGCCATGATGTTCCTCACTATCTTCAATTCCTGAATGAAGAAGAAAGTTGGGAGCTGTTTCGCAGGAAAGTGTTTAGGGGTGAAGACTACCCTTCTGATTTGGAGCCTTTGGGGAAGCAGATGGTTCGAAGTTGTCGTGGTTTGCCGCTCTCCATCATTGTCTTAGCAGGGTTGCTAGCCAACAAGGAAAAGTCACATAAAGAATGGTCTAAAGTGGTGGGTCATGTTAATTGGTATCTCACTCAAGACGAGACCCAAGTGAAGGATATAGTTCTCAAACTCAGCTATGACAATTTGCCAAGGAGATTAAAACCATGTTTTCTCTATCTTGGGTTATTTCCAGAAGACTTTGAAATACCTGTTACACCATTATTGCAAAAATGGGTTGCAGAAGGTTTTATACAAAATACAGGAAACAGAGACCCAGATGACGTTGCGGAAGATTACTTTTATGAGCTCATTGATCGTAGTTTGGTCCAGGTAGTAAGAGTTGAGACTAATGCAGGTGTTGAGACTTGTCAGGTTCATGATCTTCTTCGAGATCTTTGCATATTAGAAAGCAAAGAGGACAAAGTTTTTGAAGTTTGCACAGACCATAATATTCTAATTTCATCAAAACCACGCAGGCTGTCAATTCACGGTAAGACGGATCACTACATTTCTTTAAGCAATAATGATCATTCATGTGTTCGTTCCTTGTTCTTCTTTGGCTCACATTACTATATTCGCGGGAGGGACTGGAAATGGATTTTTAAAAACTTAAAATTGGTTCGAGTGTTGGAGTTTGGACTAAACGGCTCTGATAAGATCCCTTCCAATGTAGGGAATTTTATCCATTTAAAGTATCTGAGAATAGACATAGCGTATGTTAGGTTTGTTCCAGATTCAATACTTAAGCTTTGGAATTTACAAACCATAGACCTAAGTCCTCCGAGGGGTAACGTTCCAATTTCTTTCCCTGCCAAAATATGGAAACTGAGACATTTAAGGCATTTGAATACGCCACGACCTATCAAGCTGGGAGGGAGTTGTTCAGGATCATATGAGAAGATGTGGAATGCTCAAACTATATCTTCCCTGGTACTCAATAGCCAAGCAATGTCTTTGATAAAAAGAGGAACATTCCCCAATGTTAAGAGGTTAGGATTGAGAGTGACTTCAGAATGCGAAGCTGAATTACCCAAATTGTTGCAGAGCTTACAACAATTAAGTTATTTGAACAAGTTAGTAATTGTCCTCCGAGATAGAGATGATGAAAGTGTAAAGAAATTGACCGATGAGAGTCTGAAAAGGAACAATGGTTTCAAGCCGCAAGAAGTGTTACAAAGCTTAGGACAATTCAATTGCCTAACTATTTTAACCATTGAGAATGCTTTCGACCTTTTAACCTGTGAACTCACATTCCCTCCAACCGTTACAGAGTTAACGTTGTCGGAGATTGACTGCATTAGTGATGAGGGGATAAATGGTTTGGGAAATCACACCAAACTAAAAAAATTGAGACTTTTGGGAGATGTAACCTGGTCTCGGGAATCCTTTGACTTGAATTGTGTCGGAGGCGGCTTCTCGCAATTGGAAGTGATTGAAATGGAAAATTTGACACTTCAAAAGTGGAAACTAGACAATGGTGCAATGTCGAGGCTTCAGAGTGTGACGATTAACCATTGTGAAAGGTTAGATGATCTCCCAAATGAACTTTGGTCATTGAGTGGCTTGAGAAAAGTGCAGGTGATGAAACCTTCAAAAGAAATGGCTCACACGCTGAGGAATTTGGAAATGAAGAATGGGGTTCAACTCGTCACAGAGGATTATCAACCTCGATTTCAATCTCGGTTGGATAGTATTGATTCGATGGATTCCAATACTTTTGAATATATTAGTGAAATCTAA 2862 0.4154 MEESVVTFVLDHLAQLVAREANLLYGVEDRVQSLQNELQMIKDLLNTTKRKKGMEHTVLNQIRDVAHVAEDVIDTFVAKVAIYKRRTILGRMLRGFGQLRLFHHVAEKIDTIKATLNDIRDNKDKYDAFKETNNQSAADLEAEEEKRAQSLHILRRNVEEEDVVGFIHDSKDVINLLLEGGSNRKAVSIVGMGGLGKTTLARKVYNSSQVMNHFDCRAWVYVSNECRVKDLLIGLFKHLMPNFEQQQPRGNKRGKKSAGDINDLSEEELKKLVRNCLEWKKYLVVVDDLWKKQDWDEVLDAFPDNNRGSRILITSRLKEVALHAGHDVPHYLQFLNEEESWELFRRKVFRGEDYPSDLEPLGKQMVRSCRGLPLSIIVLAGLLANKEKSHKEWSKVVGHVNWYLTQDETQVKDIVLKLSYDNLPRRLKPCFLYLGLFPEDFEIPVTPLLQKWVAEGFIQNTGNRDPDDVAEDYFYELIDRSLVQVVRVETNAGVETCQVHDLLRDLCILESKEDKVFEVCTDHNILISSKPRRLSIHGKTDHYISLSNNDHSCVRSLFFFGSHYYIRGRDWKWIFKNLKLVRVLEFGLNGSDKIPSNVGNFIHLKYLRIDIAYVRFVPDSILKLWNLQTIDLSPPRGNVPISFPAKIWKLRHLRHLNTPRPIKLGGSCSGSYEKMWNAQTISSLVLNSQAMSLIKRGTFPNVKRLGLRVTSECEAELPKLLQSLQQLSYLNKLVIVLRDRDDESVKKLTDESLKRNNGFKPQEVLQSLGQFNCLTILTIENAFDLLTCELTFPPTVTELTLSEIDCISDEGINGLGNHTKLKKLRLLGDVTWSRESFDLNCVGGGFSQLEVIEMENLTLQKWKLDNGAMSRLQSVTINHCERLDDLPNELWSLSGLRKVQVMKPSKEMAHTLRNLEMKNGVQLVTEDYQPRFQSRLDSIDSMDSNTFEYISEI 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium343g00004 953 Gene3D - 420 509 IPR036388 -
Vium343g00004 953 Gene3D Ribonuclease Inhibitor 543 927 IPR032675 -
Vium343g00004 953 Gene3D - 5 117 - -
Vium343g00004 953 SUPERFAMILY L domain-like 499 901 - -
Vium343g00004 953 Pfam NB-ARC domain 172 422 IPR002182 GO:0043531
Vium343g00004 953 FunFam Probable disease resistance protein At5g66910 334 421 - -
Vium343g00004 953 FunFam Probable disease resistance protein At1g63360 420 509 - -
Vium343g00004 953 Gene3D - 139 328 IPR027417 -
Vium343g00004 953 PRINTS Disease resistance protein signature 276 290 - -
Vium343g00004 953 PRINTS Disease resistance protein signature 186 201 - -
Vium343g00004 953 PRINTS Disease resistance protein signature 369 383 - -
Vium343g00004 953 PRINTS Disease resistance protein signature 867 883 - -
Vium343g00004 953 FunFam Probable disease resistance protein At1g61300 145 329 - -
Vium343g00004 953 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 434 IPR027417 -
Vium343g00004 953 Coils Coil 31 51 - -
Vium343g00004 953 CDD RX-CC_like 3 121 IPR038005 -
Vium343g00004 953 Coils Coil 126 146 - -
Vium343g00004 953 PANTHER DISEASE RESISTANCE PROTEIN RP 31 857 IPR044974 GO:0006952
Vium343g00004 953 Pfam Rx N-terminal domain 5 81 IPR041118 -
Vium343g00004 953 Gene3D - 334 419 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium343g00004 Vium-Chr343 29664 32903 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium343g00004 185 437 WRKY Transcription Factor Family AT5G45050 26.172 1.93e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium343g00004 - - vra:106779070 1289.63