LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium343g00003	ATGGCAGAGAGTGTAGTTTCCTTTGTTTTAGATCACTTAGCCCAGCTTGCCTCACGCGAAGCTAACTTACTGTATGGCGTGGAGGACAGAGTCCAGTCTCTCCAGTACGAACTTCAAATGATCAAAGACCTCCTCAATACCACAAAGAGAAAGAAGGGAATAGAACATACTGTATTCAACCAAATCAGAGATGTGGCCCACTTAGCCGAGGATGTCATCGACACATTCGTAGCCAAAGTTTCCATTCACAAGAGGAGAACCATTCTGGGGAGGATGCTCCATGGCTTTGGTCAAGCAAGGTTGATCCACCACGTAGCCAAAAAAATAGACAAGATCAAAACCACTCTCAACGAGATACGCGACAACAAGGACAAATATGATGCTTTCAAAGAAACCAATAATCAATCTGAATCAGAAGAGGCGGAGGAGAAGGAAAGGTTGCAATCGTTGCACAAGCTAAGAAAAGACGTGGAGGAAGAAGATGTGGTTGGCTTTGTCCAGGACTCCACGGATGTCGTCAAGCGACTCGAGGAAGGTGGTTCAAATCGTAAAGTTGTCTCTATTGTTGGCATGGGGGGATTGGGGAAGACCACCCTCGCCCGAAAGGTCTATAATAGCAACCAGGTGAAGAACCACTTCGATTGTCGTGCATGGGTTTATGTCTCAAACGAGTGTAGAGTTGATGAGCTTTTGCTTGGCCTTCTTAAGAATTCGATGCCAAAGTTTGAACAACAGCGCAGAGGCAACAAGAAAGTTAAGAAAAGCGCCAAAGACGTTAACAGCCTGAATGAGGAGGAGCTGAAGAAACATGTGTGGAACTGCTTGGAAAGGAAAAGGTATCTTGTGGTGATAGATGACTTGTGGAAAGGGCGGGATTGGGATGAGGTGCAAGATGCTTTTCCAGACAACAACAGAGGCAGCAGAATATTGATCACTAGTCGTTTGAAAGAGGTGGCCTTGCATGCTGGTGATGATGTTCCTCACTATCTTCAATTCTTGAGTGAAGAAGAAAGTTGGGAGTTGTTTTGCAGGAAAGTGTTTAGGGGTGAAGACTATCCTTCTGATTTGGAGCCTCTGGGAAAGCAAATGGTTCAAAGTTGTCGTGGTTTGCCGCTCTCCATCATTTTTTTAGGAGGGCTGCTAGCCAAGAAGGAAAAGTCACATAGAGAATGGTCTAAAGTGGTAGGTCATGTTAATTGGTATCTAACTAGAGATGAGACCCAAGTGAAGGATATAGTTCTCAAGCTTAGCTACGACAACTTGCCAAGGAGACTAAAACCATGTTTTCTCTATCTTGGGTTATTCCCTGAAGACTTTGAAATACCTGTTATTCCATTATTGCAAAAATGGGTTGCAGAGGGCTATATACAAGATACAGGAAATAGAGACCCAGATGATGTTGCGGAAGACTACTTGTACGAGCTCATCGATCGCAGTTTGATCCAGGTAACAAGAGTAAATTTTAATGGAGGTTTGAAGACATGTCAGGTCCATGATCTTCTACGAGATCTTTGCATAGCAGAGAGCAAAGATGGTAAAATGTTTGAAGTTTGCACAGACAATAACATTTTAATCCTTACCAAACCTCGCAGACTGTCCATTCATAGTGACATGGGTCACTACATTTCTTCAAGCGATAATGATCACTCATGCATTCGTTCCTTGTTTTTCTGTGGGCCACGTTATCATGTTCGTAGGAGAGAGTGGGAATGGCTTTTGGACAACTTCAAATTGGTTCGAGTGTTAGAGTTTGGACCTAACAGGTGTCAAAAGATCCCTTCCAATTTAGGGAATTTCATCCACTTAAGGTACTTGAGAATAGACTCAAAGCATGCTAAATTTGTTCCAGATTCAATACTCAACCTTTGGAATCTACAAACCATAGATCTGGGTATTTGGAGGTATGACGTTCCAATTTCTTTCCCTATTCAATTGTGGAAACTCAAATATTTAAGGCATTTGAATACACAAGGACCTATCAAGTTGCGAGGAAGATGTTCACCATCCTCATATGAGAAGATGTGGAATCTTCAAACCATCTCTCCCCTTATACTCAATGTGCAAGCAACGTTGCTAATAGGGAAAGGAATATTCCCCAATATTAAGAGTATGGGGTTGGATGTGGAGGATCATGGTTATGAAGAGTTAACGTTGTCATGGATTAAGTGCATTACTGATGAGGGGATGAATAGTCTCGCAAATCACTCCAAACTCAAATTTTTGAGACTTTTAGGAAATCCACTTAAGTCGGAAGATTCCATTGACCTTAATTGTGTCAGTGGCAGTTTCCCGCAGCTGGAAGTGTTGCAAATGGAATATTTGAAACTTCGAAAGTGGGAATTAGGCAATGGTGCATTGCGGAGGCTTCAAAATGTGATTATCCATGATTGTCAATCATTAGATAATCTTCCAAATGAATTATGTTCTTTGAATCGATTGAGAAAAGTGCATATAACGGACTCTCCTTCAAAACAAACGACTCATATCTTAAGAATTTTGGAAACAAATAATGGAGTTCAAGTCGTTATAGGAGATTTTTCACCTTGGAATGATGACATTTATTCCAAACGACATATCTCATTTTTTATGTATAAGGCAGCAGAAGATTTTATCCAATTCATATCCCAGTCGTGA	2634	0.4146	MAESVVSFVLDHLAQLASREANLLYGVEDRVQSLQYELQMIKDLLNTTKRKKGIEHTVFNQIRDVAHLAEDVIDTFVAKVSIHKRRTILGRMLHGFGQARLIHHVAKKIDKIKTTLNEIRDNKDKYDAFKETNNQSESEEAEEKERLQSLHKLRKDVEEEDVVGFVQDSTDVVKRLEEGGSNRKVVSIVGMGGLGKTTLARKVYNSNQVKNHFDCRAWVYVSNECRVDELLLGLLKNSMPKFEQQRRGNKKVKKSAKDVNSLNEEELKKHVWNCLERKRYLVVIDDLWKGRDWDEVQDAFPDNNRGSRILITSRLKEVALHAGDDVPHYLQFLSEEESWELFCRKVFRGEDYPSDLEPLGKQMVQSCRGLPLSIIFLGGLLAKKEKSHREWSKVVGHVNWYLTRDETQVKDIVLKLSYDNLPRRLKPCFLYLGLFPEDFEIPVIPLLQKWVAEGYIQDTGNRDPDDVAEDYLYELIDRSLIQVTRVNFNGGLKTCQVHDLLRDLCIAESKDGKMFEVCTDNNILILTKPRRLSIHSDMGHYISSSDNDHSCIRSLFFCGPRYHVRRREWEWLLDNFKLVRVLEFGPNRCQKIPSNLGNFIHLRYLRIDSKHAKFVPDSILNLWNLQTIDLGIWRYDVPISFPIQLWKLKYLRHLNTQGPIKLRGRCSPSSYEKMWNLQTISPLILNVQATLLIGKGIFPNIKSMGLDVEDHGYEELTLSWIKCITDEGMNSLANHSKLKFLRLLGNPLKSEDSIDLNCVSGSFPQLEVLQMEYLKLRKWELGNGALRRLQNVIIHDCQSLDNLPNELCSLNRLRKVHITDSPSKQTTHILRILETNNGVQVVIGDFSPWNDDIYSKRHISFFMYKAAEDFIQFISQS	877

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium343g00003	877	CDD	RX-CC_like	2	121	IPR038005	-
	Vium343g00003	877	Gene3D	-	149	326	IPR027417	-
	Vium343g00003	877	FunFam	Probable disease resistance protein At1g63360	418	507	-	-
	Vium343g00003	877	Pfam	Rx N-terminal domain	5	85	IPR041118	-
	Vium343g00003	877	FunFam	Probable disease resistance protein At1g61300	144	327	-	-
	Vium343g00003	877	Coils	Coil	140	160	-	-
	Vium343g00003	877	FunFam	Probable disease resistance protein At5g66910	332	419	-	-
	Vium343g00003	877	Pfam	NB-ARC domain	171	420	IPR002182	GO:0043531
	Vium343g00003	877	SUPERFAMILY	L domain-like	497	820	-	-
	Vium343g00003	877	PANTHER	DISEASE RESISTANCE PROTEIN RP	33	797	IPR044974	GO:0006952
	Vium343g00003	877	Gene3D	-	418	508	IPR036388	-
	Vium343g00003	877	Gene3D	Ribonuclease Inhibitor	571	836	IPR032675	-
	Vium343g00003	877	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	153	432	IPR027417	-
	Vium343g00003	877	PRINTS	Disease resistance protein signature	274	288	-	-
	Vium343g00003	877	PRINTS	Disease resistance protein signature	784	800	-	-
	Vium343g00003	877	PRINTS	Disease resistance protein signature	185	200	-	-
	Vium343g00003	877	PRINTS	Disease resistance protein signature	367	381	-	-
	Vium343g00003	877	Gene3D	-	332	417	IPR042197	-
	Vium343g00003	877	Gene3D	-	5	95	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium343g00003	Vium-Chr343	19431	22367	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium343g00003	163	435	WRKY Transcription Factor Family	AT5G45050	23.913	2.33e-07	53.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium343g00003	-		-	vra:106779091	1461.82