Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium343g00001 ATGGCCAAGAAGAAGAGCTGGTTTAGTCTGGTGAAGAGGCTCTTTTTGAGGGATCCCACACAAGATAAGGATAAAAGAAGGAAATGGATATTTGGAAGGCTAAAGAACAAGAGATTACCTTCAATTACAGCTCCACTTCCATCAAAAGAGACAACACTAAGCGAAGCAGAGGAAGAACAAAGCAAGCATGCTTTGACAGTGGCCATTGCCTCAGCAGCAGCTGCTGAAGCTGCTGTTACTGCTGCACATGCTGCTGTTGAGGTTGTTCGCCTCACTGGGGTCTCACAATCTGCCCTTATTTGCAAAGAAAAGTCAGAAGAATCTCATCCTCTCAAAACTAGTAATGCTGCTCCTCAATTCACACACCAGTGCAAGAGGGACATTCAAGAATCTGCTGCAGTCATCAAAATTCAAACTGCATTTAGGGGTTACCTGGCTAGGAAGGCTTTGAGGGCATTGAAGGGAATAGTGAAACTACAAGCTATCATTCGTGGCAGAGCAGTAAGACGCCAAGCTATGAGTACTCTTAAGTGCTTGCAGTCCATTGTGAGCATCCAATCACAGGTCTGTGCAAGGAGGCTTCAAATGGTTGAAGGGAGATGTGACTACACTGAAAATGAAGAGTTGCATGATTCAAAAGACAAGATAATTAGGATGGACTCAAACAGTGAAAGAAAGTGTGATGAGAGCACTCCATCGAAGGAAGAGTTAGACAGCTCTTGCATAAGCATGAAAGAAACGGTTCTCAAGAGAGAAAGAATAAAAGAATACTCATTTAACCATAGAAGGTCAGCAGAGTCAGAAAGAAGTAAAGTAAATGGAAGATGGAGATACTGGCTAGAGCAATGGGTAGATACACAACTTTCAAAGAGCAAAGAACTTGAAGATTTAGACTCAGTTTTTAGCTCTCATGCTAGGAGTGGGGAGGAATATGGAGGCAGACAACTTAAGGTGAGAAGTATTAACAGGCAAAATCCAGTTGAAGGATTGGATTCTCCTACAATTGGTTCAAGAAGATCTTTTCCTCATAGGAGACAGTGTTCTGTGGGAGAAGACCAGTCATTTTCAAGCTCTCCTGCAACTCCAGCATACATGGCTGCAACAGAATCAGCCAAAGCAAAAGCAAGATCAACAAGCTCACCAAAAATAAGGACTGGGGGGAACATTGACATGAATTCTGATAGCTATTCACCATGCAAGAAAAAGCTATCCATTGCATCTTCCATTAACAGTGAGGTGCTTAGTGGTGGTAGGATGGCCAAGTTTAGTGGTAACCAGCAAAGATCTCCAAGCTTTAAGGGCCTTTCAGTGCCTATAAAATCAAGCCGAACTATCAAGGATCTCAGTATTAATTCAGATTGTTCACTGCCTAATTGGGGTCCTCAAGGTTCCTTCAAATGA 1401 0.4268 MAKKKSWFSLVKRLFLRDPTQDKDKRRKWIFGRLKNKRLPSITAPLPSKETTLSEAEEEQSKHALTVAIASAAAAEAAVTAAHAAVEVVRLTGVSQSALICKEKSEESHPLKTSNAAPQFTHQCKRDIQESAAVIKIQTAFRGYLARKALRALKGIVKLQAIIRGRAVRRQAMSTLKCLQSIVSIQSQVCARRLQMVEGRCDYTENEELHDSKDKIIRMDSNSERKCDESTPSKEELDSSCISMKETVLKRERIKEYSFNHRRSAESERSKVNGRWRYWLEQWVDTQLSKSKELEDLDSVFSSHARSGEEYGGRQLKVRSINRQNPVEGLDSPTIGSRRSFPHRRQCSVGEDQSFSSSPATPAYMAATESAKAKARSTSSPKIRTGGNIDMNSDSYSPCKKKLSIASSINSEVLSGGRMAKFSGNQQRSPSFKGLSVPIKSSRTIKDLSINSDCSLPNWGPQGSFK 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium343g00001 466 SMART iq_5 129 151 IPR000048 GO:0005515
Vium343g00001 466 ProSiteProfiles IQ motif profile. 154 181 IPR000048 GO:0005515
Vium343g00001 466 MobiDBLite consensus disorder prediction 372 394 - -
Vium343g00001 466 Pfam IQ calmodulin-binding motif 132 151 IPR000048 GO:0005515
Vium343g00001 466 Pfam Protein of unknown function (DUF4005) 351 432 IPR025064 -
Vium343g00001 466 MobiDBLite consensus disorder prediction 347 364 - -
Vium343g00001 466 MobiDBLite consensus disorder prediction 326 394 - -
Vium343g00001 466 ProSiteProfiles IQ motif profile. 130 158 IPR000048 GO:0005515
Vium343g00001 466 PANTHER IQ-DOMAIN 5-RELATED 1 406 - -
Vium343g00001 466 Gene3D - 129 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium343g00001 Vium-Chr343 5181 8154 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium343g00001 1 466 IQD Protein Family AT5G13460 45.492 3.85e-111 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium343g00001 - - gmx:100800192 745.347