LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium3436g00002	ATGCTTGAGTTGCACACAACAAGATCTTGGGATTTCTTGGAGTCAGATTTAGGATTGAAGGCTCCTCATTATGTCACTTCCAAAACCCTAATCCAACACTCTTCAATTGATTCCATTATTGGTGTCATAGACACAGGGATATGGCCAGAGTCTCCAAGTTTCAGAGATGAGGGTATAGGGGAGATCCCTTCAAGGTGGAAAGGAGTTTGCATGGAGGGTCATGATTTCAAGAAATCCAATTGCAATAGAAAATTGATTGGTGCAAGATTCTACAATATTGAAGCTACACCAGGTAGCAACCAGACTCAAATAGAAGCAAGCAAAGGTTCCCCAAGAGATTCTGTTGGACATGGCACTCACACTGCATCAATTGCAGCTGGTGTTTATGTGAAGAATGCCAGTTATTATGGTTTAGCACTAGGCACAGCAAGGGGTGGTTCACCTTCTACTAGGATTGCTGCTTATAGAACATGCTCAGAAGAAGGATGCTCTGGTGCCATCATTCTAAAGGCTATTGATGATGCTGTAAAGGATGGAGTAGATGTGATCTCAATCTCAATTGGACTCAGCTCACTGTTTCAATCAGACTTTTTGAGTGATCCCATTGCCATTGGAGCATTTCATGCAGAACAAATGGGGGTCATGGTGGTGTGCTCAGCTGGCAATGATGGCCCTGATCCTTTCACAGTTGTCAACACTGCACCATGGATATTTACTATTGCAGCTTCTAATATTGATAGGAACTTCCAATCAACTATTGTTCTTGGAAATGGAAAGTATTTCCAAGGTACAGGCATTAACTTCTCAAATCTTACTCATTCAAAGATGCATAACCTTGTCTTTGGAGAGCAAGTAGCTGCCAAATTTTCCCCTGCATCAGAAGCTAGGAATTGTTATCCTGGATCATTAGATTACAACAAAATTGCTGGCAACATTGTTGTTTGTGCAAATGATGATCCAACTGTTGCAAGGCGAATCAAGAAGCTAGTTGTACAAGATGGAAGAGCCATAGGGTTGATACTCATTGATGAGGACAACAAAGATGTTCCCTTTGATGCAGGTGTCTTTCCCTTCACTGAGGTTGGATATCTTGAAGGACATCAGATCCTACAATACATAAACTCTACCAAGAACCCAACTGCAACAATTCTTCCAACAACAGAAGTTGTTAGATATAAGCCTTCACCAATTGTTGCATCTTTCTCATCTAGAGGTCCTTCAAGCCTTACAGAAAACATTCTCAAGCCGGATGTGATGGCTCCAGGAATTGGCATTTTGGCTGCTATGATTCCTAAAAGTACTGACCCGGGAAGTGTTCCAATTGGGAACAAACCATCCTTGTTTGGCATAAAATCTGGTACATCTATGGCTTGCCCACATGTGACAGGTGCAGCAGCATTCATTAAATCAGTACACCAAAATTGGAGTCCTTCAATGATAAAATCAGCATTGATGACAACAGCAACGAATTACAACAACTTGAGGAAGCCTCTCACTAACAGCTCAAACTACATTGCTGACCCACATGAAATTGGAGTTGGTGAAATTAATCCAGTCAAAGCTCTCTACCCTGGATTAGTTTTTGAAACAAACATAGAAGACTATCTCAGATTCCTCTGTTATTTTGGCTATTCACAGAAAAAGGTAAGGTCAATGTTTAAGACCAACTTTGATTGCCCCAAGAACTCCTCTGAAGACCTTATATCCAACATCAATTATCCATCAATATCTATAAGTACACTTAAAAGGCAACAAAAACCAAAAGTGATCACAAGAACAGTTACCAATGTTGGATCCCCTAATGCCACATACACTGCAAAAGTGAGATCATCTGAGGGATTGGTTGTGAAGGTCATCCCCAATAAACTTGTGTTTTCTGAGGGTGTTCAAAGAATTACCTACAAAGTCTCATTCTATGGCAAGGAGGCCAATGGTGGATACAATTTTGGATCTCTAACATGGCTTGATGGCCACCATTATGTTCATACAGTCTTTGCAGTCAAAGTTGAATAA	2013	0.4078	MLELHTTRSWDFLESDLGLKAPHYVTSKTLIQHSSIDSIIGVIDTGIWPESPSFRDEGIGEIPSRWKGVCMEGHDFKKSNCNRKLIGARFYNIEATPGSNQTQIEASKGSPRDSVGHGTHTASIAAGVYVKNASYYGLALGTARGGSPSTRIAAYRTCSEEGCSGAIILKAIDDAVKDGVDVISISIGLSSLFQSDFLSDPIAIGAFHAEQMGVMVVCSAGNDGPDPFTVVNTAPWIFTIAASNIDRNFQSTIVLGNGKYFQGTGINFSNLTHSKMHNLVFGEQVAAKFSPASEARNCYPGSLDYNKIAGNIVVCANDDPTVARRIKKLVVQDGRAIGLILIDEDNKDVPFDAGVFPFTEVGYLEGHQILQYINSTKNPTATILPTTEVVRYKPSPIVASFSSRGPSSLTENILKPDVMAPGIGILAAMIPKSTDPGSVPIGNKPSLFGIKSGTSMACPHVTGAAAFIKSVHQNWSPSMIKSALMTTATNYNNLRKPLTNSSNYIADPHEIGVGEINPVKALYPGLVFETNIEDYLRFLCYFGYSQKKVRSMFKTNFDCPKNSSEDLISNINYPSISISTLKRQQKPKVITRTVTNVGSPNATYTAKVRSSEGLVVKVIPNKLVFSEGVQRITYKVSFYGKEANGGYNFGSLTWLDGHHYVHTVFAVKVE	670

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium3436g00002	670	FunFam	subtilisin-like protease SBT1.5	246	390	-	-
	Vium3436g00002	670	Gene3D	-	539	669	-	-
	Vium3436g00002	670	CDD	Peptidases_S8_3	2	489	IPR034197	-
	Vium3436g00002	670	Gene3D	Peptidase S8/S53 domain	38	535	IPR036852	GO:0004252\|GO:0006508
	Vium3436g00002	670	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	2	663	IPR045051	-
	Vium3436g00002	670	Pfam	Subtilase family	38	493	IPR000209	GO:0006508\|GO:0008236
	Vium3436g00002	670	ProSiteProfiles	Serine proteases, subtilase domain profile.	9	522	-	-
	Vium3436g00002	670	SUPERFAMILY	Subtilisin-like	37	526	IPR036852	GO:0004252\|GO:0006508
	Vium3436g00002	670	PRINTS	Subtilisin serine protease family (S8) signature	35	54	IPR015500	-
	Vium3436g00002	670	PRINTS	Subtilisin serine protease family (S8) signature	113	126	IPR015500	-
	Vium3436g00002	670	PRINTS	Subtilisin serine protease family (S8) signature	452	468	IPR015500	-
	Vium3436g00002	670	FunFam	Subtilisin-like protease SBT1.5	37	317	-	-
	Vium3436g00002	670	CDD	PA_subtilisin_like	252	383	-	-
	Vium3436g00002	670	Pfam	Fibronectin type-III domain	570	667	IPR041469	-
	Vium3436g00002	670	Gene3D	-	246	390	-	-
	Vium3436g00002	670	ProSitePatterns	Serine proteases, subtilase family, serine active site.	453	463	IPR023828	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium3436g00002	Vium-Chr3436	6858	19790	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium3436g00002	1	667	Subtilisin-like Serine Gene Family	AT1G20150	44.070	0.0	550

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium3436g00002	K25898		-	gmx:100781053	1175.61