Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3435g00013 ATGGCATCAAGAATCACCGTTAAACAACAGGGCGCAGATGAAGCAGTAGTGAAAGGAGGGAAACAGCAGTGTGCAGCGAAAAGAAGGAACCGCAAGGCGTTAGGTGATATTGGGAATTTGGCCAATGTAGGAGAAGTTGAAGTCAAACCTAATCGACCCATCACTAGGAGTTTTGGAGCCCTTCTACATGCCAAAGCACAAGCAGAAGCAGCAGCAGCCGCAGCTACTGATAAGAATAACAAGAAACAGGTTTCTGCCAATGTGGCTGGACTTCCACCTGTTTCTAATGCAGTTGCACCGACCAAAAGAGTGGTCCAAAAACGGGGCCAGAGAAAAGTCACTGTAAAACCAAAACCTGAGAAACCCATCGACAAGGAAGCTATCCCAGATAAGAAGATTCGGAAAGACAAAACAAGGGAAGGAGATGACAACTCTAAGAAGAATTCACAAGCTTTTACTTCAGTGCTCACGGCTCGAAGCAAGGCAGCAAGCGGCATAACAAACAAACCGAAGGAGCAGATTATTGACATTGATGCTGGTGATGTTGACAATGAGCTAGCTGCTGTGGAGTATATTGATGACCTTTACAGGTTCTATAAGCTCGTTGAGAATGAGAACCGCCCTCATGACTACATAGACTCACAACCTGAGATAAATGAGAGGTCGAGAGCTATACTGGTTAATTGGCTGATCGAAGTCAACACCAAATATAACCTTTCACTTGAGACCCTTTACTTGACAATCAATATCATTGATCGGTTCCTATCAGTTAAGAGTATTCCAAGGAGTGGGGAACTGCAATTGGTTGGCATCAGTGCCATGCTGATGGCATCCAAGTATGAAGAAATCTGGGCGCCTGAGGTTAAAGATATTGTCTGCCTTACAACTTACACTCATGAACAGATACTGGTCATGGAGAAAACCATACTGTATCAGCTGGAATGGACTTTGACTGTGCCAACACCTCTTGTTTTCCTGGTTCGTTTTATCAAGGCAGCAGTCCCAGATCAGGAGTTGGAAAACATGGCTCATTTTCTGTCTGAGCTGGGATTGGTGCACTATGCCACCATAATGTATTGCCCGTCAATGATTGCTGCCTCAGCAGTCTTCGCAGCTAGATGCACTCTGAATAAGACTCCCCTTTGGAATGAGACACTTAAGTTGCACACTGGTTACTTACAAGAACAACTTATGGAATGTTCTAGATTATTGGTGAGTTTCCACTCCATGGTTGGGGATGAAGAAGAGCTGAAGGTAGTGCACAGAAAGTATTCTGATCCTCAGAAAAGAGCTGTTGCTATGCTCCCACCAGCTAAAAATCTTCTGCCCGAAGGTTCTGTCTCTCAACAGAGTTAA 1356 0.4462 MASRITVKQQGADEAVVKGGKQQCAAKRRNRKALGDIGNLANVGEVEVKPNRPITRSFGALLHAKAQAEAAAAAATDKNNKKQVSANVAGLPPVSNAVAPTKRVVQKRGQRKVTVKPKPEKPIDKEAIPDKKIRKDKTREGDDNSKKNSQAFTSVLTARSKAASGITNKPKEQIIDIDAGDVDNELAAVEYIDDLYRFYKLVENENRPHDYIDSQPEINERSRAILVNWLIEVNTKYNLSLETLYLTINIIDRFLSVKSIPRSGELQLVGISAMLMASKYEEIWAPEVKDIVCLTTYTHEQILVMEKTILYQLEWTLTVPTPLVFLVRFIKAAVPDQELENMAHFLSELGLVHYATIMYCPSMIAASAVFAARCTLNKTPLWNETLKLHTGYLQEQLMECSRLLVSFHSMVGDEEELKVVHRKYSDPQKRAVAMLPPAKNLLPEGSVSQQS 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3435g00013 451 PANTHER CYCLINS 145 426 IPR039361 -
Vium3435g00013 451 MobiDBLite consensus disorder prediction 113 146 - -
Vium3435g00013 451 SUPERFAMILY Cyclin-like 183 317 IPR036915 -
Vium3435g00013 451 MobiDBLite consensus disorder prediction 1 27 - -
Vium3435g00013 451 Pfam Cyclin, C-terminal domain 320 437 IPR004367 -
Vium3435g00013 451 CDD CYCLIN_AtCycB-like_rpt2 320 437 - -
Vium3435g00013 451 Gene3D - 208 318 - -
Vium3435g00013 451 SMART cyclin_7 324 406 IPR013763 -
Vium3435g00013 451 SMART cyclin_7 228 311 IPR013763 -
Vium3435g00013 451 FunFam G2/mitotic-specific cyclin-1 289 433 - -
Vium3435g00013 451 Gene3D - 194 434 - -
Vium3435g00013 451 Pfam Cyclin, N-terminal domain 195 317 IPR006671 -
Vium3435g00013 451 SUPERFAMILY Cyclin-like 319 439 IPR036915 -
Vium3435g00013 451 ProSitePatterns Cyclins signature. 223 254 IPR006671 -
Vium3435g00013 451 PIRSF Cyclin_A_B_D_E 1 451 IPR046965 GO:0016538|GO:0044772
Vium3435g00013 451 MobiDBLite consensus disorder prediction 101 150 - -
Vium3435g00013 451 SMART Cyclin_C_2 320 438 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3435g00013 Vium-Chr3435 167698 170186 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3435g00013 1 442 Core Cell Cycle Gene Families AT4G37490 48.678 1.01e-126 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3435g00013 K21777 - gmx:547919 625.935