Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3435g00012 ATGGCGTCAAGAGCAATAGTTCAACAACACGCAGCCAGAGGTGAAGCAGTAATAGGGGGTGAAAAACAGCAGAAGAAGAACGGTGTAGCGGATGGAAAGAATCGTAAGGCGTTGGGTGATATTGGGAATTTGGCCAATGTAAGAGGAGTTGTTGAAGCCAAGCCTCATCGCCCCATCACTAGGAGTTTTGGTGCCCAACTACTTGCCAAAGCACAAGCCGCAGCGGTTGTCGAGAATAATAAGAGACAAGCCTGTGCTAATGTGGCTGGTCCTGCTCCCATCGCTGTGGCCAAAAGAGTTCCCAAGCCGGGACAGAAGAAAGTTACTGTAAAACCAAAGCCTGAGGAAGTCATTGACATTGAAGATAGTTCAGACAAGGAGGTCCTGAAAGACAAGAAAAAGGAAGGAGATTGCAAGTCCAAGAAGAATTCACAAGCTTTTACATCAGTTCTCACGGCTAGAAGCAAGGCAGCATGTGGCATAAGTAACAAACCAAAGGAGAATATTATAGACATCGATGCCAGTGATGTTGACAATGAACTTGCTGCTGTGGAGTACATTGATGACATTTACAAGTTCTATAAACTTGTTGAGCACGAAAGCCGCCCCCATGACTACATTCACTCACAACCTGAGATAAATGAGAAGATGAGAGCTATTCTGGTTGATTGGCTGATTGATGTCCACAGCAAGTTTGAACTTTCACTCGAGACCCTTTACCTGACCATCAATATTATCGATCGATTCCTAGCAGTTAAGACTGTTCCAAGGAGGGAGCTGCAATTGGTAGGCATCAGTGCCATGCTGATGGCATCCAAGTATGAAGAAATCTGGCCACCAGAGGTCAATGACTTTGTCCACCTCTCAGATAGAGCATACACTCATGAACAGATACTTGTTATGGAGAAAGTTATACTGGGAAAGTTGGAATGGACTTTGACTGTTCCCACACCTTTTGTTTTCCTGGTGCGTTTTATCAAGGCATCAGTCCCAGATCAGGAGTTGGAAAACATGACCCATTTTCTGTCTGAGTTGGGAATGATGAATTACGCGACCTTAATGTATTGCCCATCAATGCTTGCTGCCTCAGCAGTCTTCGCAGCTAGATGTACGCTGAATAAGACTCCCCTTTGGAATGACACGCTTAAGTTGCACACTGGCTACTCAGAAGAACAACTTATGGATTGTGCTAAACTATTGGCGAGCTTCCACTCCTCTGCTGGAAGTGAAAAGCTGAAGGTAGTGTACAGAAAGTATTCTGATCCACAGAAGGGAGCTGTTGCTGTGCTCCCACCGGCTAAGTATCTTCTGCCTGAAGGTTCAGCCTCCCAATAA 1335 0.4539 MASRAIVQQHAARGEAVIGGEKQQKKNGVADGKNRKALGDIGNLANVRGVVEAKPHRPITRSFGAQLLAKAQAAAVVENNKRQACANVAGPAPIAVAKRVPKPGQKKVTVKPKPEEVIDIEDSSDKEVLKDKKKEGDCKSKKNSQAFTSVLTARSKAACGISNKPKENIIDIDASDVDNELAAVEYIDDIYKFYKLVEHESRPHDYIHSQPEINEKMRAILVDWLIDVHSKFELSLETLYLTINIIDRFLAVKTVPRRELQLVGISAMLMASKYEEIWPPEVNDFVHLSDRAYTHEQILVMEKVILGKLEWTLTVPTPFVFLVRFIKASVPDQELENMTHFLSELGMMNYATLMYCPSMLAASAVFAARCTLNKTPLWNDTLKLHTGYSEEQLMDCAKLLASFHSSAGSEKLKVVYRKYSDPQKGAVAVLPPAKYLLPEGSASQ 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3435g00012 444 SMART cyclin_7 223 307 IPR013763 -
Vium3435g00012 444 SMART cyclin_7 320 402 IPR013763 -
Vium3435g00012 444 Pfam Cyclin, C-terminal domain 316 432 IPR004367 -
Vium3435g00012 444 SMART Cyclin_C_2 316 433 IPR004367 -
Vium3435g00012 444 ProSitePatterns Cyclins signature. 218 249 IPR006671 -
Vium3435g00012 444 Gene3D - 189 428 - -
Vium3435g00012 444 FunFam G2/mitotic-specific cyclin-1 310 428 - -
Vium3435g00012 444 CDD CYCLIN_AtCycB-like_rpt1 166 311 - -
Vium3435g00012 444 Gene3D - 203 314 - -
Vium3435g00012 444 Pfam Cyclin, N-terminal domain 189 313 IPR006671 -
Vium3435g00012 444 MobiDBLite consensus disorder prediction 1 36 - -
Vium3435g00012 444 CDD CYCLIN_AtCycB-like_rpt2 316 432 - -
Vium3435g00012 444 SUPERFAMILY Cyclin-like 315 435 IPR036915 -
Vium3435g00012 444 SUPERFAMILY Cyclin-like 178 313 IPR036915 -
Vium3435g00012 444 PIRSF Cyclin_A_B_D_E 1 444 IPR046965 GO:0016538|GO:0044772
Vium3435g00012 444 FunFam G2/mitotic-specific cyclin 202 309 - -
Vium3435g00012 444 PANTHER CYCLINS 139 421 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3435g00012 Vium-Chr3435 156816 159554 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3435g00012 1 437 Core Cell Cycle Gene Families AT4G37490 54.343 8.86e-154 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3435g00012 K21777 - gmx:547919 725.317