Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3435g00011 ATGCCTTCGAGCTCGAATTCAAAGCAGAAAAGGAAGCAATTGAAGGCGCAGCTGCAAAACTCACCATTGTCGTCGAATGCCACCACCGTGCCTCCCAAAACGCAGCAACAACAAGCACAAGAGCATGCCTCTTTATGCGAAGAAGCTTCTAGAAAGTTCCCTTCTCTCATCGCTGAATCCGCGATCGTCGCTAAAATCATACATGTCGACGACACCGTTCCCCTTTTCAAGGGCTTCAGAATTTGGCTCTCCGAACCTTCGATGCTCTCCTCCTCTCTCTCCCCGGGTTCGATTGTGTCGGTGTCTATTCCATCTTCAGACGAGAAAAGTTCACAATTGCATAGTTTTCCCCTCGTGTCATTAGCTAATGAGTGTGCCAAATGCCATGGACTGGAAATCGGGACGGCAGTTGATGATGATGATGCGGGGAACTACTTTGTGCTTGCAACGGTGTTTCCTGCTAATAAGGTTTTGAAGGATGGAGTACGCCTGTCTTCAAACCTTTATTATTCTATGGGATGTCCTCCTATGGGTTCAAGTGTGTTTGTTTGTGCATTACAGAAACAACTCTTGCCTACTCCTGCCAGTGGGAGCAATCAAAAGCATTATATGGAAAATAATTGTTTACCTATTAATAATTGCAAGGAATTGTATCTTCAGTTGGTTCCTTCTAAAAGTGGGCTACCATTGAAGTTTAATAATTTTCCCTCATTGGACGTGTCTAAGGTGAAATCTCATGTCCAATTTGAGAATGACATTGTTGCTTCTCTTGCAACATCTTCTACACCTTCTTCTGTATCAAAGTTTCCTAATGCTAGTCGTTTGTCTTCTCCACAATTTGAGGATTCAGCATCTAGTGTGCCAAATCAGAAGAGTCAATCACTGATTTCATCTGATGTCAGCTTAGCATTAAGTGATGAAAGTTCTAAGCAGTCACTTGAGACATGGGCAACTTCATGGTTATATTCTCGATCTTTACTTCTAGGGAATCTTGTCAGTATTCCAATGTTTTCAGAGTGTTTTTTACAAGTGATAGGAGCTAAGAAGAAGCCAGTTGCCAAATCTGGTCATTTTCCATCAGATGGAAGCAGTGATTTATATCCTGAGGATTCTGATATAGCAGATAGTGTATATCAGGCTTTCACTGTTAATTACGAAACAAAGGTAATTTTATCTTTGCCGTCAAATGCAGCATCAGCATCTGAACAGCCAATTCAAAGGGATATACCTTGTGTGAAACTAGAACACAAAGTTGCTAATGTTAGCTTACCTGATAAAATCTCTAAATTAGGTGGTCTATCCAAAGAATATACACTTCTAAAGGACATAATTTCTTCGTCAGTGAACGATGCTTTATCAAGCTTTGGTCTAAGAACTACAAGAGGTGTCCTTCTTCATGGTCCAACCGGTACAGGAAAGACTTCCCTGGCTCAATTATGTACTCATGATGTTGGAGTCAAATTTTTCCCAATAAATGGACCTGAAATTGTTACCCAATATTATGGGGAAAGTGAGCAAGCTTTGCATAAAGTTTTTGATTCCGCCATTGAAGCTGCACCTGCTGTGGTATTCATTGATGAATTAGATGCCATTGCCCCTGCAAGGAAAGAAGGAGGTGAAGAGTTATCTCAAAGATTGGTTGCGACTTTATTGAATATGATGGATGGAATTAGTAGAACTGAAGGGTTACTTGTAATTGCTGCCACTAACCGCCCTGACCATATTGATCCAGCTCTCAGACGACCTGGAAGATTTGACAAGGAAATTGAAATTGGTGTGCCATCCCCCAAACAACGTTCAGATATTTTGTTCACTCTTCTCAATGAAATGGATCATTGTCTCTCTGAGTTACAAATTGAACAGCTTGGTACAGTCACTCATGGTTTTGTGGGTGCTGATCTAGTTGCACTTTGCAATGAGGCAGCCTTGATTTGTCTACGGCATTATGCTAGCTTTAAGAAGACTTATGATTCTTGTTCTGATTATATAACCGGGAAACCTGTTCTGAGGAATGGTGCAACAAACTCAATAGATCATTTGGATGAGTCAACTTCATCTACTTCAGATATGTTGGCCGCCAGTTGTGTATTACCTTCTTGCATGGTAACTTGTGAAACTACGGATATAATTCCTGATAGTGGTAAAGAAGAGCAGATTTTGAAAGTAAGCTTTGAAGATTTTCAGAAGGCCAGGATGAAAATAAGACCTAGTGCCATGAGAGAGGTAATCCTTGAGGTTCCAAAAGTTAATTGGGAAGATGTTGGCGGTCAAAAGGAGGTCAAAGCTCAATTGATGGAAGCAGTTGAATGGCCACAGAAACACCATGATGCATTCGACCGTATTGGAACTCGCCCTCCTACAGGTGTATTGATGTTTGGGCCTCCAGGTTGTAGTAAAACCCTCATGGCACGTGCAGTTGCTTCTGAAGCAGGGTTGAACTTTCTAGCAGTCAAGGGTCCTGAACTCTTCAGCAAATGGGTTGGTGAATCTGAGAAGGCCGTCAGATCATTATTTGCAAAAGCAAGGGTCAATGCCCCATCAATAGTATTTTTTGATGAAATAGACAGTCTTGCTGTAACTCGTGGGAAGGAAAGTGATGGTGTTTCAGTGTCAGATAGGGTCATGAGTCAACTTCTTGTTGAGTTAGATGGTCTACATCAAAGAGTTAATGTCACTGTCATAGCTGCTACAAATAGGCCAGACAAGATTGACCCTGCCCTTTTAAGGCCAGGACGCTTTGACCGTCTGCTATATGTTGGACCTCCAAATGAGGCGGATAGGGAAGAGATATTTCGCATTCATCTACGTAAAATCCCATGCGGTTCTGATGTTAGCCTTAGAGAACTAGCTCTACTCACAGATGGTTGTACTGGGGCTGACATATCATTGATATGTCGTGAGGCAGCTGTTGCAGCAATTGAGGAGAGCCTTGATGCTTCAGTTATAACAATGAAGCATTTAAAGATGGCAATCAAACAGATCCAGCCATCAGATGTTCACTCCTACCAAAAGCTGTCAACAAAATTTCAAAGGGCCGTCCACTGCAGTGATATAAAGGATGAATTCAATCCTATGCAGCGCGACATTAAATCTACTCACTTCAACATTTGGAAGTTCATAAAATCTTGCACGTTGTTCCTCTATCAGACTCCAGCTTCCATCTTCAATTTAAGAACTGCTCGAAGTAGTTAA 3192 0.417 MPSSSNSKQKRKQLKAQLQNSPLSSNATTVPPKTQQQQAQEHASLCEEASRKFPSLIAESAIVAKIIHVDDTVPLFKGFRIWLSEPSMLSSSLSPGSIVSVSIPSSDEKSSQLHSFPLVSLANECAKCHGLEIGTAVDDDDAGNYFVLATVFPANKVLKDGVRLSSNLYYSMGCPPMGSSVFVCALQKQLLPTPASGSNQKHYMENNCLPINNCKELYLQLVPSKSGLPLKFNNFPSLDVSKVKSHVQFENDIVASLATSSTPSSVSKFPNASRLSSPQFEDSASSVPNQKSQSLISSDVSLALSDESSKQSLETWATSWLYSRSLLLGNLVSIPMFSECFLQVIGAKKKPVAKSGHFPSDGSSDLYPEDSDIADSVYQAFTVNYETKVILSLPSNAASASEQPIQRDIPCVKLEHKVANVSLPDKISKLGGLSKEYTLLKDIISSSVNDALSSFGLRTTRGVLLHGPTGTGKTSLAQLCTHDVGVKFFPINGPEIVTQYYGESEQALHKVFDSAIEAAPAVVFIDELDAIAPARKEGGEELSQRLVATLLNMMDGISRTEGLLVIAATNRPDHIDPALRRPGRFDKEIEIGVPSPKQRSDILFTLLNEMDHCLSELQIEQLGTVTHGFVGADLVALCNEAALICLRHYASFKKTYDSCSDYITGKPVLRNGATNSIDHLDESTSSTSDMLAASCVLPSCMVTCETTDIIPDSGKEEQILKVSFEDFQKARMKIRPSAMREVILEVPKVNWEDVGGQKEVKAQLMEAVEWPQKHHDAFDRIGTRPPTGVLMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARVNAPSIVFFDEIDSLAVTRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNEADREEIFRIHLRKIPCGSDVSLRELALLTDGCTGADISLICREAAVAAIEESLDASVITMKHLKMAIKQIQPSDVHSYQKLSTKFQRAVHCSDIKDEFNPMQRDIKSTHFNIWKFIKSCTLFLYQTPASIFNLRTARSS 1063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3435g00011 1063 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 426 652 IPR027417 -
Vium3435g00011 1063 FunFam Calmodulin-interacting protein 111 594 749 - -
Vium3435g00011 1063 FunFam calmodulin-interacting protein 111 isoform X1 746 921 - -
Vium3435g00011 1063 ProSitePatterns AAA-protein family signature. 891 909 IPR003960 GO:0005524|GO:0016887
Vium3435g00011 1063 Pfam ATPase family associated with various cellular activities (AAA) 789 920 IPR003959 GO:0005524|GO:0016887
Vium3435g00011 1063 Pfam ATPase family associated with various cellular activities (AAA) 463 592 IPR003959 GO:0005524|GO:0016887
Vium3435g00011 1063 Gene3D - 750 997 IPR027417 -
Vium3435g00011 1063 MobiDBLite consensus disorder prediction 1 44 - -
Vium3435g00011 1063 Gene3D - 413 593 IPR027417 -
Vium3435g00011 1063 Pfam AAA+ lid domain 943 988 IPR041569 -
Vium3435g00011 1063 Pfam AAA+ lid domain 618 648 IPR041569 -
Vium3435g00011 1063 ProSitePatterns AAA-protein family signature. 563 581 IPR003960 GO:0005524|GO:0016887
Vium3435g00011 1063 FunFam Putative vesicular transport protein (CDC48) 414 592 - -
Vium3435g00011 1063 PANTHER AAA-FAMILY ATPASE 69 1010 - -
Vium3435g00011 1063 CDD RecA-like_CDC48_r2-like 760 919 - -
Vium3435g00011 1063 Gene3D - 594 749 - -
Vium3435g00011 1063 MobiDBLite consensus disorder prediction 1 45 - -
Vium3435g00011 1063 FunFam spermatogenesis-associated protein 5-like protein 1 922 1004 - -
Vium3435g00011 1063 SMART AAA_5 459 595 IPR003593 GO:0016887
Vium3435g00011 1063 SMART AAA_5 785 923 IPR003593 GO:0016887
Vium3435g00011 1063 Gene3D - 922 992 - -
Vium3435g00011 1063 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 747 1002 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3435g00011 Vium-Chr3435 136894 145258 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3435g00011 7 1053 Calmodulin-binding Proteins AT3G56690 53.726 0.0 989