Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3435g00010 ATGAGGGAAGAGGATTCCAATTGGTTTTCGCGATGGGAAGAGGAGCTTCCTCCGCCAGAGGAACTCATGCCCCTATCCCAAACCCTAATCACGCCCGATCTAGCCATGGCTTTCGACATCAGAAACCCCCACACCTCCACCAACCCCAACACCGCCCAACAGCATCAACACCAACAGCAGCCACCGCAACAACAACAACAACAGCAACAACCTTCCAACCCTTCATCGCTCCCCAACCCCCAGCAACCCACCTCCAACGACTTTGCCGACTCCGGCGAGCTCGGCTCCGGCACCGCCGGCGAGGAGCCCGCTCGAACCCTCAAGCGCCCCCGCCTTGTGTGGACCCCGCAGCTCCATAAGCGCTTCGTCGACGCCGTCGCGCACCTCGGCATAAAAAACGCCGTTCCCAAGACCATAATGCAGCTCATGAGCGTCGATGGTTTGACCCGAGAAAACGTGGCCAGCCACTTGCAGAAGTACCGTCTCTATCTCAAACGCATGCAGGGGATTTCCGCCGCCGGACCCGGTGGACCCGGAGGCGGTGCCTCCGGCGCCGTCGCGGACCCCGCCACTGACCACCTCTTCGCCAGCTCCCCGGTGCCGGCGCATTTCCTGCACCCCGCGACGAGGCCTAATTCGGATCATTTCCTTCCGTTTGTGCCGGTGCCGGCGCTCCACCACCACCAGCAGCAACAGCAGCAGCTGGCCGCGGCGGCCCAGTACCATAGGCAGGTGAGCCATTTCGGGTCGCCGCCGAACGGGCACTTCGAGAACCCCTTCATTTCTAGGCCGAATCTTCAGAGGATGGGTGGGGGTGGAGGTGGAGGTGGTCCTGTGCATAACCACCACCCTGTGAGTGGCTATGTGGAGGATATGGAATCTGCTAATGCTGCCTCAGGAGGTAGAAAGGTTCTTACTCTGTTTCCAACTGGGGATGATTGA 942 0.6062 MREEDSNWFSRWEEELPPPEELMPLSQTLITPDLAMAFDIRNPHTSTNPNTAQQHQHQQQPPQQQQQQQQPSNPSSLPNPQQPTSNDFADSGELGSGTAGEEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISAAGPGGPGGGASGAVADPATDHLFASSPVPAHFLHPATRPNSDHFLPFVPVPALHHHQQQQQQLAAAAQYHRQVSHFGSPPNGHFENPFISRPNLQRMGGGGGGGGPVHNHHPVSGYVEDMESANAASGGRKVLTLFPTGDD 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3435g00010 313 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 3 270 IPR044841 GO:0003700|GO:0006355
Vium3435g00010 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 114 165 IPR017930 -
Vium3435g00010 313 MobiDBLite consensus disorder prediction 41 92 - -
Vium3435g00010 313 FunFam Two-component response regulator 105 168 - -
Vium3435g00010 313 Gene3D - 106 168 - -
Vium3435g00010 313 SUPERFAMILY Homeodomain-like 106 166 IPR009057 -
Vium3435g00010 313 Pfam Myb-like DNA-binding domain 113 161 IPR001005 -
Vium3435g00010 313 MobiDBLite consensus disorder prediction 1 18 - -
Vium3435g00010 313 NCBIfam myb-like DNA-binding domain, SHAQKYF class 110 162 IPR006447 GO:0003677
Vium3435g00010 313 MobiDBLite consensus disorder prediction 1 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3435g00010 Vium-Chr3435 132151 134497 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3435g00010 1 313 G2-like Transcription Factor Family AT3G10760 57.865 8.69e-100 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium3435g00010 Myb_DNA-binding 2.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3435g00010 - - gmx:100797237 468.003