Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3435g00001 ATGATCAACAGTCCTTCGCTGCTCTGCCTACGAACATGGAGTTCTTGTCCTTCCTCTTCCTTGTCCTTCTCTTTGTTCTCTCTCTACTTCGCCAGAGAAAACTCTCACAACAACAAATGCTTCAGACCCTACCCTCTCATCGGAGGATTATTGGATTTCCTCAAAAACCGCCACCGCTTCCTCGAATGGACCACCCAAGTCCTCAATGACTGCCCCACCAACACCGCCGTCATGTCCCGTCCCTACAGATTCAACATCGTCGTAACGGCCAATCCCGACAACGTCGAACATATGCTCAAAACCCGATTCGAAAACTACCCAAAGGGTGAACGCTTCATCCATCCCCTCCATGACCTCCTCGGCAACGGAATCTTCAACTCCGACAGTGAACTTTGGAAGGTGCAGCGAAAAGTCGCCAGCTACGAGTTTACCACCAACTCACTCCGTAACTTCATTGTCAACTCCATCACCACCGAACTCCAAACCAGGCTTCTTCCAATTCTCTCCAAAGCCTCCCAGACAAATAGGGTCCTCGATTTGCAGAACCTCCTCGAGCGCTTCTCCTTCGACAACATCTGCAAGCTAGCCTTCAACGTCGACCCCGCCTGTCTCGGCGGTGACTGCACTGCTGGCACCGATTTCATGAGCGCGTTCGAGGATGCAACCAAGCTAATTTCAGAGAGGTTCCTGAGCTTGTCACGTTTCGCGTGGAAAACAAAGAAGCTGTTCAACTTTGGATCAGAAAGGAGGCTCCGAGAATCAATCACCACTGTCCACGAATTCGCTGACTCCATCATACGGTCCAGATTGGAAGCCAAGGAACACACCCGCGACGACGAAGATTTACTTTCGCGTTTCATCAGAACAAAGGAGAGCTCGCCGGAGTTTCTCCGCGACGTTGTGATAAGTTTCATTCTCGCGGGTCGTGACTCGACCTCGTCCGTGCTCACCTGGTTCTTCTGGATTCTTTCATCCAGACCTCACGTGCGGAGAAAAATTCGCGACGAAATCGCTACGGTTCGGTCGGCCACGGGCGGCGTTGGCCCGTTAGGGCACGAGGAGCTGAGAGAGATGCATTATTTGCATGCGGCGATTTCAGAGTCGATGAGGTTGTACCCTCCCGTGCCGGTTGACACGAAGGAGTGTCTGAACGACGACGTTTTGCCCGATGGAACGAGGGTTGGGAAGGGGTGGCTGCTAACATACCACACGTACGCGATGGGAAGAATGGAGAGCGTGTGGGGAAAAGACTGTACCGAATATAATCCGGAAAGGTGGTTGCAGAACGGCGTGTGCCGAATGGAGAGTCCGTTTCGTTTTCCGGTGTTTCACGCCGGTCCTCGAATGTGTCTGGGAAAAGAAATGGCTTACGTTCAGATGAAGTCCATTGCAGCTTCAGTGGTGGAAAAGTTTGAGATTGAGGCAGCGGATAGAGACACGTGTCCAGCGCATTCGCTTTCTTTGACGTTGAAGATGAAGGGAGGGTTCCCAGTGAGGATAAGACTAAGGGACGCCTGCTAA 1521 0.5214 MINSPSLLCLRTWSSCPSSSLSFSLFSLYFARENSHNNKCFRPYPLIGGLLDFLKNRHRFLEWTTQVLNDCPTNTAVMSRPYRFNIVVTANPDNVEHMLKTRFENYPKGERFIHPLHDLLGNGIFNSDSELWKVQRKVASYEFTTNSLRNFIVNSITTELQTRLLPILSKASQTNRVLDLQNLLERFSFDNICKLAFNVDPACLGGDCTAGTDFMSAFEDATKLISERFLSLSRFAWKTKKLFNFGSERRLRESITTVHEFADSIIRSRLEAKEHTRDDEDLLSRFIRTKESSPEFLRDVVISFILAGRDSTSSVLTWFFWILSSRPHVRRKIRDEIATVRSATGGVGPLGHEELREMHYLHAAISESMRLYPPVPVDTKECLNDDVLPDGTRVGKGWLLTYHTYAMGRMESVWGKDCTEYNPERWLQNGVCRMESPFRFPVFHAGPRMCLGKEMAYVQMKSIAASVVEKFEIEAADRDTCPAHSLSLTLKMKGGFPVRIRLRDAC 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3435g00001 506 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 443 452 IPR017972 GO:0005506|GO:0016705
Vium3435g00001 506 PRINTS P450 superfamily signature 441 450 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3435g00001 506 PRINTS P450 superfamily signature 363 374 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3435g00001 506 PRINTS P450 superfamily signature 307 324 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3435g00001 506 PRINTS P450 superfamily signature 450 461 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3435g00001 506 Gene3D Cytochrome P450 28 505 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3435g00001 506 PRINTS E-class P450 group I signature 296 313 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3435g00001 506 PRINTS E-class P450 group I signature 362 380 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3435g00001 506 PRINTS E-class P450 group I signature 440 450 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3435g00001 506 PRINTS E-class P450 group I signature 316 342 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3435g00001 506 PRINTS E-class P450 group I signature 450 473 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3435g00001 506 PANTHER CYTOCHROME P450 31 498 - -
Vium3435g00001 506 Pfam Cytochrome P450 41 486 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3435g00001 506 SUPERFAMILY Cytochrome P450 41 503 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3435g00001 506 CDD CYP86A 75 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3435g00001 Vium-Chr3435 1459 2992 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3435g00001 33 503 Cytochrome P450 AT3G56630 57.353 0.0 589
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3435g00001 - - pvu:PHAVU_001G118600g 784.637