Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3433g00008 ATGGAAATGGAAGATCACAATCACCACCACCGCCATCACCATCATCAGCATCACCATCACCATCACCACCAGCAGCATCAACATCAACATCAGCACCACTTTGGCGTCAACGATCTCAGGCAAGTCGTCAATGGGCCGAGGACTTCCCACAACGCCTTCCTCTCCATGCCACCCCACCCAACGGCGGAGCTTTTCCCGGGCCACCGGAATCTCACACCCTTGCCCACTCCCCAGCAGCAGCAACAACACTACGAGGTTATGATGTTCGGTCGTGACATAATGCCACCTAGCCTTCACGACTTCACTTCCACACCCCACGATTCTGCTGCTGCTGCTGCTGCAGCAGCAGCCACCATGACTCTACCCACTCCACCCACCTTTGATGCCGAGGGTGCAGGTTGCATCGGTGGGGACCCCTCCACTGGAAGATGGCCCAGACAAGAGACCCTCACTCTCCTTGAGATCAGATCTCGCTTGGACCCTAAATTCAAAGAGGCTAACCACAAAGGACCCTTATGGGATGAAGTCTCTAGGATCATGTCTGAAGAACATGGATATCAAAGGAGTGGGAAAAAGTGCAGGGAGAAGTTTGAGAATTTGTACAAGTATTACAAGAAGACAAAGGATGGTAAGGCGGGGAGACATGATGGGAAGCATTACAGGTTCTTTCGTCAACTTGAAGCCTTGTATGGAGAAAACAGTAGCACAGTTTCAGTCCCAGAAACCAATGTTGTTGGCAGCATTCATTTTCAAGCAAGCAGCCATGACCCCTCCCAGACAAATCAAGATAAGTTTCAGTCTCACAATAGCAAGCATTGTGATAGCCTCAGCCTCACCAACTCCACTAACTTTGATACAACATCATCTGATGATGACAATGACCACCACAGTATGGAGAATGAGTCCATAGAGAAGAGGAGAAAGAGGAACAGTGGGAGGAGTTGGAAGGTGAAGATAAAAGACTTCATTGACTCACAGATGAGGAAGCTTGTGGAGAAGCAGAAGGAGTGGTTGGATAAACTTGTGAAGACACTGGAAGAGAAGGAGAAGGAGAGGATGTTAAGAGAGGAAGAGTGGAGAAAACAAGAGGCAAACAGGTTAGAGAGGGAGCAAAAGTTTTGGGCCAAAGAGAGAGCGTGGATTGAAGCCAGGGATGCTGCTCTAATGGAGGCTTTACAAAAGCTAACTGGAAGAGAAATAATGAAGCCTGAAACTCCCAATCATGGTATCAATGTAACGGCTGCTGAAGTTCAAAACCACAGTGAAAACCAGAATAATGAAGACGAGAGTGAAATCTTAAACAGCTGCAATGTTATCAGAGGTGGTGATAGGTGGCCAGAATCTGAAATTACAAGGCTTCAACAGCTGAGAGCTGAGATAGAGACAAGGTTTCCATGCAGCGAAATTTCTGAAGAGGTTTCATGGGAGGTAGTAGCAACCAAAATGGCTTGTTTTGGCTACGAAAGGAGTGCTTTGATGTGCAAAGAGAAATGGGAAAGTATCAGTAACTATCCAAGGGAGGGTGAAAAGGAAGGGAGCAAGAAGTGCAAGGAAAACACTAGAAACAGCATTTTCTTCAAGAACAATGATGATCATAGACAATCTTCCTTATACGACCAAGGAAGTGCCTACTGTGATGATATCAGTGATCAAGGAAAAGAGATTGAGAGGCTACAAACAAATAATAGTTCTTCACCTTCAAAATGCAATACCGGAAACGTTGATCCCTCTGATAGCTGCTTCCCCTTCTTGATGAGCAGTGAGGGTGGAAACTTGTGGGAGAATTACGGCCTAAAGCTCAACAAAGAAAACCAAAACCACTGA 1824 0.4649 MEMEDHNHHHRHHHHQHHHHHHHQQHQHQHQHHFGVNDLRQVVNGPRTSHNAFLSMPPHPTAELFPGHRNLTPLPTPQQQQQHYEVMMFGRDIMPPSLHDFTSTPHDSAAAAAAAAATMTLPTPPTFDAEGAGCIGGDPSTGRWPRQETLTLLEIRSRLDPKFKEANHKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYKYYKKTKDGKAGRHDGKHYRFFRQLEALYGENSSTVSVPETNVVGSIHFQASSHDPSQTNQDKFQSHNSKHCDSLSLTNSTNFDTTSSDDDNDHHSMENESIEKRRKRNSGRSWKVKIKDFIDSQMRKLVEKQKEWLDKLVKTLEEKEKERMLREEEWRKQEANRLEREQKFWAKERAWIEARDAALMEALQKLTGREIMKPETPNHGINVTAAEVQNHSENQNNEDESEILNSCNVIRGGDRWPESEITRLQQLRAEIETRFPCSEISEEVSWEVVATKMACFGYERSALMCKEKWESISNYPREGEKEGSKKCKENTRNSIFFKNNDDHRQSSLYDQGSAYCDDISDQGKEIERLQTNNSSSPSKCNTGNVDPSDSCFPFLMSSEGGNLWENYGLKLNKENQNH 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3433g00008 607 SMART sant 140 203 IPR001005 -
Vium3433g00008 607 SMART sant 441 504 IPR001005 -
Vium3433g00008 607 ProSiteProfiles Myb-like domain profile. 136 201 IPR001005 -
Vium3433g00008 607 PANTHER FI21293P1 70 572 - -
Vium3433g00008 607 MobiDBLite consensus disorder prediction 288 308 - -
Vium3433g00008 607 MobiDBLite consensus disorder prediction 252 287 - -
Vium3433g00008 607 Pfam Myb/SANT-like DNA-binding domain 143 229 IPR044822 -
Vium3433g00008 607 Pfam Myb/SANT-like DNA-binding domain 443 511 IPR044822 -
Vium3433g00008 607 CDD GT1 444 507 - -
Vium3433g00008 607 MobiDBLite consensus disorder prediction 8 30 - -
Vium3433g00008 607 FunFam Trihelix transcription factor GT-2 445 507 - -
Vium3433g00008 607 MobiDBLite consensus disorder prediction 252 310 - -
Vium3433g00008 607 ProSiteProfiles Myb-like domain profile. 444 502 IPR001005 -
Vium3433g00008 607 MobiDBLite consensus disorder prediction 1 33 - -
Vium3433g00008 607 Gene3D - 144 206 - -
Vium3433g00008 607 Gene3D - 445 506 - -
Vium3433g00008 607 Coils Coil 331 358 - -
Vium3433g00008 607 CDD GT1 143 208 - -
Vium3433g00008 607 FunFam trihelix transcription factor PTL-like 144 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3433g00008 Vium-Chr3433 93357 96780 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3433g00008 29 603 Trihelix Transcription Factor Family AT5G03680 42.786 2.19e-132 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vium3433g00008 Myb_DNA-bind_4 8.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3433g00008 - - aprc:113870891 872.463