Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3433g00006 ATGAAGACGATAATAGAATGCTGTGTCTCTGCAAGTGCCACACGTGTCTGTGGCCTTTTGCCATACAGAAATTATTCATGTAATAGCATGCTTGCAACTTGTTCAGCATCATCCTCAACAACAAGAAGAACTTTATCTCTTTCTCTCATCTCCACCACTTTCTCTGCATTCATCTTCTCACTTTCTCCTCCTTCTTCCTCTTCTTCTTCTTCTTCTTCAAAATTACCCTTTTCAAAGTTCTTTGAGATCCCTGATTCCGGTGGAGTTAAGGCTTTGGACCTCCTTGATGGTTCAGGTGAAGTTCCCTCAGATGGGGACCAGGTTGCAATTCACTACTATGGCAGGCTGGCAGCAAAACAGGGATGGCGTTTTGACTCAACCTATGACCACAAAGATGACAATGGCGAACCCAATCCATTTGTCTTTGTCCTTGGCTCTGGCAAGGTTATAGCTGGAATTGATGTGGCAGTGAGATCGATGAAAGTAGGAGGTATTCGTAGAGTCATCATACCTCCATCACTTGGGTATCAAAACACATCACAAGAGCCAATCCCACCGAACTTCTTTGACAGGCAGAGGTTGTTCACTACCATTTTTAATCCAACTCGCCGTGCAAATGGAGAAGGCTCCACTTTAGGAACAGTTATATTTGATATTGAGCTGGTTAGCGTGAGGCATCCGTGA 684 0.4415 MKTIIECCVSASATRVCGLLPYRNYSCNSMLATCSASSSTTRRTLSLSLISTTFSAFIFSLSPPSSSSSSSSSKLPFSKFFEIPDSGGVKALDLLDGSGEVPSDGDQVAIHYYGRLAAKQGWRFDSTYDHKDDNGEPNPFVFVLGSGKVIAGIDVAVRSMKVGGIRRVIIPPSLGYQNTSQEPIPPNFFDRQRLFTTIFNPTRRANGEGSTLGTVIFDIELVSVRHP 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3433g00006 227 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP17-1, CHLOROPLASTIC 18 226 IPR044197 -
Vium3433g00006 227 Gene3D - 71 224 IPR046357 GO:0003755
Vium3433g00006 227 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 101 222 IPR001179 GO:0003755
Vium3433g00006 227 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 105 225 IPR001179 GO:0003755
Vium3433g00006 227 SUPERFAMILY FKBP-like 86 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3433g00006 Vium-Chr3433 41045 43566 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3433g00006 64 225 Calmodulin-binding Proteins AT5G48570 31.902 6.08e-15 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3433g00006 - - gmx:100808927 348.206