Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3433g00003 ATGGAGAACTCGCGTAGACCGTTCGATAGATCGCGAGAGCCTGGACCGAAGAAGCCCAGATTGATGGAAGAGCTGGATCGGGCTCCGAATTCTGGTGCGAGACAGTTTCCTCAACTACAAGTGATTTCTGGGGTTTCGACGTTACCGTCTGCAAGGTTTAGAACAACCGAAAGAGACGTTGAAAGCAATGATTTTGGTCGCCGGGGTGGTGCTGGAGGTGGCGGTTATCAGCCCCAGCCACTGCCATTTCAGGAGCTTGTTACTCAGTATAAGGCAGCTCTTGCAGAACTTACTTTCAACTCGAAACCGATAATTACCAACTTGACTATCATTGCAGGGGAGAACCAAGCTGCAGAGAAGGCCATTGCAGCAACTGTTTGTGCTAACATTTTAGAGGTTCCTAGTGATCAAAAGCTGCCATCACTTTATCTCTTAGACAGTATTGTTAAGAATATTGGGCGGGATTATATAAAATACTTCGCTGCCAGGCTACCTGAGGTATTCTGCAAAGCATACAGACAGGTTGATCCTTCTGTCCATCAAAGTATGAGGCATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCTCAGACCCTTCAGATTATTGAGAAAGAACTGGGCTTCACTTCTGCAGTCAATGGCTCGTCTGCTTCTTCTACTCTCAGGAGTGATTCACAGTCACAACGTCCACCTCATAGTATTCATGTTAATCCCAAGTATTTAGAAAGACAACGTCTACAGCAGTCCAGCAGGACTAAAGGAGTTGATGATATGACTGGAGCAATTTCAAACTCAAATGATGACCAAGAGATGCCTGGTAGAACTTTAGGTGTTTTACGATCATGGGTGGATCATAATGTTACTGTTAGCGTCCATTCACGTGAAAATGATCAACGTGCTCGAAGAGATGCATTCAATGATTCTGTTCCAGAAAAGAGCACTGGTGCATCCTATGGAAGCAATGAACTTGGTTCCAATATTTCAAGGAATTTAGGCTTGGGTATCAGCCGACCTGGTGGTAGGGTGACCGAGTCAGGACATGACAAAGGTTGGTACAACAAATCTGGTGTTGTTGCAGGGACCATGCCTGGGCAAAGAAATGGTTTGAGTAACAAGTATAGTTTTTCAAGTACTGAAGCATCAAAGTCCATGGTTTTGGATGCACATCATCAACCGGCACATAATATAACTAGCACACAGAGCAGTGTGATCTCAAATAGCTGGAAAAATTCCGAGGAAGAGGAGTACACATGGGATGAGATGAACTCTGGCTTGACTGGTCACAGTACATCTATTGTTAGCAGCTTGAGCAAAGATACTTGGACTGCTGATGATGAGAATTTGGAAGTTGAAGATCGCATCCAAGTCAAAAATCCTTTTGTGGTAAATGCTGATAGAGAAATAGTTATTGAATCTCAAGCCAATGAAAAGAAACAATTTCCTGCATCTCAACATCATTCATCACTATCATGGCAATTGCAGGAGCAGCATTCTATTAATGAGTTGAATCGAAAAGCTGGTCACTCCAGCAGATTTGTGTCCGCACTTGGTGCCATACCGTCCAATACAAATGCCTCTACTGCCAGAATGGGGAGTCGGCCATTCCTTTCAAGTGCAACCATAGGATTGCCAGGAATTGCAGGACCCTTTCATTCTTTGGGAGCTGAAAACCCTTCAGGGCAGTCACCTTTGCAGCGGAGGTCTCCATCACCACCAGGTCCATTCTCTTCAATGACTTTTCAGGCAAGGCATCAGCAGCAATTGGGCACTTCTCTTGAGGTTACTGTTAAGACTGAGAAGCCACCTGTGTCCAAGGTTCCTTTAGTCAGAGAAACTAAAAGTAGCATGAGTACAGGGAATCTTCCAACTCGATTAGGTGTTCGGCCTTCACGAACAGGTGGTCCTTCCCCTGCCACATTAATTTCTTCATTGTCCACTAGTGCATTACCATCTTCATTAGGTCCTTCTGGTGATAATTCATCTGCTCTCTCAAAAATGCCTCAAAGAAAGGCTGGACAACCACCTAGGTTATCTACTCTACCATCTACTGCCTCTAATGTCAGCAGTGCCTCTGCCCAGACAAGTGATACCAATCATAACTTGAATCCAATTGCCAACCTTTTAAGCTCTTTAGTTGCAAAAGGCTTGATATCTGCAGAAACAGAATCAACATCTAAGGAGCCCTCTGAGTTGCTGACTCGACTGGAAGAAGAAAGCGATAGCATTACCACCGGTAACTCTTTACCTGTGGCCTCAATTTCTGGTTCTGCAGCTGTACCAGTCCCTTCAATCAAAGATGAGGTTGATGACACTGCAAGAACGCCCATATCCTTGTCTGAATCAACCAGTCCAGGAGTAGTAAATGTCATTGGCTTTGAGTTTAAGCATGATGTATTACGAGAATTCCATTCATCTGTAATTAGTGGATTATTTGATGATCTTCCACATCATTGCAGCATTTGTGGCTTTAGACTTAGATTCCAAAAACAGTTCAATAGACACTTGGAGTGGCATGCCACAAGGGATAGAGAAGAGAATGGTTTAACTAAGGCAGTGAGATGGTATCTTAAGTCAAGTGACTGGATTGTTGGCAAGGCTGAATATGTATCAGAGAATGATGCTGATTCTGTAGATACTTATGGCAATGAAGCAGACAGAAGTCAAGAGGATGCTATGGTTGTAGCAGATGAAAACCAATGCTTGTGTGTGTTGTGCGGTGAGCTATTTGAAGATTTTTACTGTGAGGAAAGTGGGGAATGGATGTTCAAAGGAGCTGTTTACTTTGCTAACTCTAATAGCAACAGTGAGATGGGAACTGGAGATATGAGTACTGGAAGGGGTCCCATCATTCATGCAAATTGCTTATCAGATAACTTGATTTCAAGTGTCCATGAGATGGTAAGACTTATTACTTGA 2916 0.4362 MENSRRPFDRSREPGPKKPRLMEELDRAPNSGARQFPQLQVISGVSTLPSARFRTTERDVESNDFGRRGGAGGGGYQPQPLPFQELVTQYKAALAELTFNSKPIITNLTIIAGENQAAEKAIAATVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPSVHQSMRHLFGTWKGVFPPQTLQIIEKELGFTSAVNGSSASSTLRSDSQSQRPPHSIHVNPKYLERQRLQQSSRTKGVDDMTGAISNSNDDQEMPGRTLGVLRSWVDHNVTVSVHSRENDQRARRDAFNDSVPEKSTGASYGSNELGSNISRNLGLGISRPGGRVTESGHDKGWYNKSGVVAGTMPGQRNGLSNKYSFSSTEASKSMVLDAHHQPAHNITSTQSSVISNSWKNSEEEEYTWDEMNSGLTGHSTSIVSSLSKDTWTADDENLEVEDRIQVKNPFVVNADREIVIESQANEKKQFPASQHHSSLSWQLQEQHSINELNRKAGHSSRFVSALGAIPSNTNASTARMGSRPFLSSATIGLPGIAGPFHSLGAENPSGQSPLQRRSPSPPGPFSSMTFQARHQQQLGTSLEVTVKTEKPPVSKVPLVRETKSSMSTGNLPTRLGVRPSRTGGPSPATLISSLSTSALPSSLGPSGDNSSALSKMPQRKAGQPPRLSTLPSTASNVSSASAQTSDTNHNLNPIANLLSSLVAKGLISAETESTSKEPSELLTRLEEESDSITTGNSLPVASISGSAAVPVPSIKDEVDDTARTPISLSESTSPGVVNVIGFEFKHDVLREFHSSVISGLFDDLPHHCSICGFRLRFQKQFNRHLEWHATRDREENGLTKAVRWYLKSSDWIVGKAEYVSENDADSVDTYGNEADRSQEDAMVVADENQCLCVLCGELFEDFYCEESGEWMFKGAVYFANSNSNSEMGTGDMSTGRGPIIHANCLSDNLISSVHEMVRLIT 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3433g00003 971 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 40 957 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Vium3433g00003 971 MobiDBLite consensus disorder prediction 610 625 - -
Vium3433g00003 971 MobiDBLite consensus disorder prediction 549 699 - -
Vium3433g00003 971 MobiDBLite consensus disorder prediction 1 27 - -
Vium3433g00003 971 MobiDBLite consensus disorder prediction 571 594 - -
Vium3433g00003 971 MobiDBLite consensus disorder prediction 213 273 - -
Vium3433g00003 971 MobiDBLite consensus disorder prediction 1 39 - -
Vium3433g00003 971 MobiDBLite consensus disorder prediction 242 271 - -
Vium3433g00003 971 MobiDBLite consensus disorder prediction 310 325 - -
Vium3433g00003 971 SUPERFAMILY ENTH/VHS domain 85 204 IPR008942 -
Vium3433g00003 971 MobiDBLite consensus disorder prediction 675 699 - -
Vium3433g00003 971 SMART 558neu5 85 207 IPR006569 -
Vium3433g00003 971 FunFam polyadenylation and cleavage factor homolog 4 79 207 - -
Vium3433g00003 971 ProSiteProfiles CID domain profile. 82 210 IPR006569 -
Vium3433g00003 971 Gene3D - 82 207 IPR008942 -
Vium3433g00003 971 CDD CID_Pcf11 87 199 IPR047415 -
Vium3433g00003 971 MobiDBLite consensus disorder prediction 52 78 - -
Vium3433g00003 971 MobiDBLite consensus disorder prediction 293 325 - -
Vium3433g00003 971 MobiDBLite consensus disorder prediction 635 667 - -
Vium3433g00003 971 MobiDBLite consensus disorder prediction 293 308 - -
Vium3433g00003 971 ProSitePatterns Zinc finger C2H2 type domain signature. 818 838 IPR013087 -
Vium3433g00003 971 Pfam CID domain 91 200 IPR006569 -
Vium3433g00003 971 MobiDBLite consensus disorder prediction 213 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3433g00003 Vium-Chr3433 16958 23787 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3433g00003 778 954 C2H2 Transcription Factor Family AT4G04885 36.667 1.22e-33 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3433g00003 K14400 - gmx:100807857 1507.66