Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3433g00002 ATGGAGAACTCGCGTAGACCGTTCGATAGATCGCGAGAGCCTGGACCGAAGAAGCCCAGATTGATGGAAGAGCTGGATCGGGCTCCGAATTCTGGTGCGAGACAGTTTCCTCAACTACAAGTGATTTCTGGGGTTTCGACGTTACCGTCTGCAAGGTTTAGAACAACCGAAAGAGACGTTGAAAGCAATGATTTTGGTCGCCGGGGTGGTGCTGGAGGTGGCGGTTATCAGCCCCAGCCACTGCCATTTCAGGAGCTTGTTACTCAGTATAAGGCAGCTCTTGCAGAACTTACTTTCAACTCGAAACCGATAATTACCAACTTGACTATCATTGCAGGGGAGAACCAAGCTGCAGAGAAGGCCATTGCAGCAACTGTTTGTGCTAACATTTTAGAGGTTCCTAGTGATCAAAAGCTGCCATCACTTTATCTCTTAGACAGTATTGTTAAGAATATTGGGCGGGATTATATAAAATACTTCGCTGCCAGGCTACCTGAGGTATTCTGCAAAGCATACAGACAGGTTGATCCTTCTGTCCATCAAAGTATGAGGCATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCTCAGACCCTTCAGATTATTGAGAAAGAACTGGGCTTCACTTCTGCAGTCAATGGCTCGTCTGCTTCTTCTACTCTCAGGAGTGATTCACAGTCACAACGTCCACCTCATAGTATTCATGTTAATCCCAAGTATTTAGAAAGACAACGTCTACAGCAGTCCAGCAGGACTAAAGGAGTTGATGATATGACTGGAGCAATTTCAAACTCAAATGATGACCAAGAGATGCCTGGTAGAACTTTAGGTGTTTTACGATCATGGGTGGATCATAATGTTACTGTTAGCGTCCATTCACGTGAAAATGATCAACGTGCTCGAAGAGATGCATTCAATGATTCTGTTCCAGAAAAGAGCACTGGTGCATCCTATGGAAGCAATGAACTTGGTTCCAATATTTCAAGGAATTTAGGCTTGGGTATCAGCCGACCTGGTGGTAGGGTGACCGAGTCAGGACATGACAAAGGTTGGTACAACAAATCTGGTGTTGTTGCAGGGACCATGCCTGGGCAAAGAAATGGTTTGAGTAACAAGTATAGTTTTTCAAGTACTGAAGCATCAAAGTCCATGGTTTTGGATGCACATCATCAACCGGCACATAATATAACTAGCACACAGAGCAGTGTGATCTCAAATAGCTGGAAAAATTCCGAGGAAGAGGAGTACACATGGGATGAGATGAACTCTGGCTTGACTGGTCACAGTACATCTATTGTTAGCAGCTTGAGCAAAGATACTTGGACTGCTGATGATGAGAATTTGGAAGTTGAAGATCGCATCCAAGTCAAAAATCCTTTTGTGGAGCAGCATTCTATTAATGAGTTGAATCGAAAAGCTGGTCACTCCAGCAGATTTGTGTCCGCACTTGGTGCCATACCGTCCAATACAAATGCCTCTACTGCCAGAATGGGGAGTCGGCCATTCCTTTCAAGTGCAACCATAGGATTGCCAGGAATTGCAGGACCCTTTCATTCTTTGGGAGCTGAAAACCCTTCAGGGCAGTCACCTTTGCAGCGGAGGTCTCCATCACCACCAGGTCCATTCTCTTCAATGACTTTTCAGGCAAGGCATCAGCAGCAATTGGGCACTTCTCTTGAGGTTACTGTTAAGACTGAGAAGCCACCTGTGTCCAAGGTTCCTTTAGTCAGAGAAACTAAAAGTAGCATGAGTACAGGGAATCTTCCAACTCGATTAGGTGTTCGGCCTTCACGAACAGGTGGTCCTTCCCCTGCCACATTAATTTCTTCATTGTCCACTAGTGCATTACCATCTTCATTAGGTCCTTCTGGTGATAATTCATCTGCTCTCTCAAAAATGCCTCAAAGAAAGGCTGGACAACCACCTAGGTTATCTACTCTACCATCTACTGCCTCTAATGTCAGCAGTGCCTCTGCCCAGACAAGTGATACCAATCATAACTTGAATCCAATTGCCAACCTTTTAAGCTCTTTAGTTGCAAAAGGCTTGATATCTGCAGAAACAGAATCAACATCTAAGGAGCCCTCTGAGTTGCTGACTCGACTGGAAGAAGAAAGCGATAGCATTACCACCGGTAACTCTTTACCTGTGGCCTCAATTTCTGGTTCTGCAGCTGTACCAGTCCCTTCAATCAAAGATGAGGTTGATGACACTGCAAGAACGCCCATATCCTTGTCTGAATCAACCAGTCCAGGAGTAGTAAATGTCATTGGCTTTGAGTTTAAGCATGATGTATTACGAGAATTCCATTCATCTGTAATTAGTGGATTATTTGATGATCTTCCACATCATTGCAGCATTTGTGGCTTTAGACTTAGATTCCAAAAACAGTTCAATAGACACTTGGAGTGGCATGCCACAAGGGATAGAGAAGAGAATGGTTTAACTAAGGCAGTGAGATGGTATCTTAAGTCAAGTGACTGGATTGTTGGCAAGGCTGAATATGTATCAGAGAATGATGCTGATTCTGTAGATACTTATGGCAATGAAGCAGACAGAAGTCAAGAGGATGCTATGGTTGTAGCAGATGAAAACCAATGCTTGTGTGTGTTGTGCGGTGAGCTATTTGAAGATTTTTACTGTGAGGAAAGTGGGGAATGGATGTTCAAAGGAGCTGTTTACTTTGCTAACTCTAATAGCAACAGTGAGATGGGAACTGGAGATATGAGTACTGGAAGGGGTCCCATCATTCATGCAAATTGCTTATCAGATAACTTGATTTCAAGTGTCCATGAGATGGACAGGATTAAATCAAGTTAA 2820 0.4394 MENSRRPFDRSREPGPKKPRLMEELDRAPNSGARQFPQLQVISGVSTLPSARFRTTERDVESNDFGRRGGAGGGGYQPQPLPFQELVTQYKAALAELTFNSKPIITNLTIIAGENQAAEKAIAATVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPSVHQSMRHLFGTWKGVFPPQTLQIIEKELGFTSAVNGSSASSTLRSDSQSQRPPHSIHVNPKYLERQRLQQSSRTKGVDDMTGAISNSNDDQEMPGRTLGVLRSWVDHNVTVSVHSRENDQRARRDAFNDSVPEKSTGASYGSNELGSNISRNLGLGISRPGGRVTESGHDKGWYNKSGVVAGTMPGQRNGLSNKYSFSSTEASKSMVLDAHHQPAHNITSTQSSVISNSWKNSEEEEYTWDEMNSGLTGHSTSIVSSLSKDTWTADDENLEVEDRIQVKNPFVEQHSINELNRKAGHSSRFVSALGAIPSNTNASTARMGSRPFLSSATIGLPGIAGPFHSLGAENPSGQSPLQRRSPSPPGPFSSMTFQARHQQQLGTSLEVTVKTEKPPVSKVPLVRETKSSMSTGNLPTRLGVRPSRTGGPSPATLISSLSTSALPSSLGPSGDNSSALSKMPQRKAGQPPRLSTLPSTASNVSSASAQTSDTNHNLNPIANLLSSLVAKGLISAETESTSKEPSELLTRLEEESDSITTGNSLPVASISGSAAVPVPSIKDEVDDTARTPISLSESTSPGVVNVIGFEFKHDVLREFHSSVISGLFDDLPHHCSICGFRLRFQKQFNRHLEWHATRDREENGLTKAVRWYLKSSDWIVGKAEYVSENDADSVDTYGNEADRSQEDAMVVADENQCLCVLCGELFEDFYCEESGEWMFKGAVYFANSNSNSEMGTGDMSTGRGPIIHANCLSDNLISSVHEMDRIKSS 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3433g00002 939 MobiDBLite consensus disorder prediction 602 634 - -
Vium3433g00002 939 MobiDBLite consensus disorder prediction 1 27 - -
Vium3433g00002 939 MobiDBLite consensus disorder prediction 213 273 - -
Vium3433g00002 939 MobiDBLite consensus disorder prediction 516 666 - -
Vium3433g00002 939 MobiDBLite consensus disorder prediction 577 592 - -
Vium3433g00002 939 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 40 924 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Vium3433g00002 939 MobiDBLite consensus disorder prediction 1 39 - -
Vium3433g00002 939 MobiDBLite consensus disorder prediction 242 271 - -
Vium3433g00002 939 Gene3D - 82 207 IPR008942 -
Vium3433g00002 939 MobiDBLite consensus disorder prediction 310 325 - -
Vium3433g00002 939 MobiDBLite consensus disorder prediction 538 561 - -
Vium3433g00002 939 Pfam CID domain 91 200 IPR006569 -
Vium3433g00002 939 SMART 558neu5 85 207 IPR006569 -
Vium3433g00002 939 ProSiteProfiles CID domain profile. 82 210 IPR006569 -
Vium3433g00002 939 FunFam polyadenylation and cleavage factor homolog 4 79 207 - -
Vium3433g00002 939 CDD CID_Pcf11 87 199 IPR047415 -
Vium3433g00002 939 MobiDBLite consensus disorder prediction 52 78 - -
Vium3433g00002 939 MobiDBLite consensus disorder prediction 293 325 - -
Vium3433g00002 939 MobiDBLite consensus disorder prediction 642 666 - -
Vium3433g00002 939 MobiDBLite consensus disorder prediction 293 308 - -
Vium3433g00002 939 SUPERFAMILY ENTH/VHS domain 85 204 IPR008942 -
Vium3433g00002 939 ProSitePatterns Zinc finger C2H2 type domain signature. 785 805 IPR013087 -
Vium3433g00002 939 MobiDBLite consensus disorder prediction 213 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3433g00002 Vium-Chr3433 16958 24360 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3433g00002 745 921 C2H2 Transcription Factor Family AT4G04885 36.667 1.23e-33 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3433g00002 K14400 - gmx:100807857 1451.42