Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3431g00001 ATGGGTACTGTAGTTCGGTTCCGACCCATTGGTGTCACCCTCTTTTGGGCTCGGGCTCGATTGGGAAAAAGAGCGCGTGAAGATGACAGTGCTGCTGTCGTGAGTGAGGGTGAGGGTGGTTCGTCACGGAGTGCGTCACAGGAAGAAAGCGACGAGAGGAGGAGGAGGAGATACAGAGGGGTGAGGCAGAGAACGTGGGGGAAATGGGCGGCAGAGATTCGCGATCCTCACAAAGCGGCGAGAGTGTGGCTTGGCACCTTCGACACCACCGAGGGATCTGCCAGAGCCTACGATGAGGCCGCATTGAGGTTTAGAGGTAACAAAGCCAAACTCAACTTCCCCGAAAACGTTACCGCGGTTCGACCTCCTCACCTTCTCGATTTTCCGGCCACCTTACTCTCGTGCTCCGGTGATGTTCCAGCGGTGTCTGGTTATTCTCCAACGGTGATGCAGGGGGCGCCGCTTCAGAGACTATTGGGGTTATTCTCAGCTTCTACGGAGCACAGGGGAGTTCCATGGACTCGATCAGTGGTTCTATGA 540 0.5611 MGTVVRFRPIGVTLFWARARLGKRAREDDSAAVVSEGEGGSSRSASQEESDERRRRRYRGVRQRTWGKWAAEIRDPHKAARVWLGTFDTTEGSARAYDEAALRFRGNKAKLNFPENVTAVRPPHLLDFPATLLSCSGDVPAVSGYSPTVMQGAPLQRLLGLFSASTEHRGVPWTRSVVL 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3431g00001 179 PANTHER DNA-BINDING DOMAIN 41 119 IPR044808 GO:0003700|GO:0009873
Vium3431g00001 179 ProSiteProfiles AP2/ERF domain profile. 57 114 IPR001471 GO:0003700|GO:0006355
Vium3431g00001 179 SMART rav1_2 57 120 IPR001471 GO:0003700|GO:0006355
Vium3431g00001 179 MobiDBLite consensus disorder prediction 27 57 - -
Vium3431g00001 179 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700|GO:0006355
Vium3431g00001 179 PRINTS Ethylene responsive element binding protein signature 96 116 IPR001471 GO:0003700|GO:0006355
Vium3431g00001 179 Pfam AP2 domain 57 106 IPR001471 GO:0003700|GO:0006355
Vium3431g00001 179 SUPERFAMILY DNA-binding domain 57 116 IPR016177 GO:0003677
Vium3431g00001 179 Gene3D AP2/ERF domain 56 116 IPR036955 GO:0003700|GO:0006355
Vium3431g00001 179 FunFam Ethylene-responsive transcription factor 2 56 115 - -
Vium3431g00001 179 CDD AP2 66 116 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3431g00001 Vium-Chr3431 22332 22871 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3431g00001 27 131 AP2-EREBP Transcription Factor Family AT2G33710 57.522 5.72e-34 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium3431g00001 AP2 2.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3431g00001 - - vum:124834474 308.145