Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3430g00026 ATGCAAAATGCAACAAGATTAAGAGGATCCAACACCAAGAGAGCAACCACCAAAATGCAAACCCACCTGCTGTTCTTCTGTTGTTACATTGGCCTCTCACTGGCTTTTACTGAAGCTGCAGCAGATGGTGAACTGTCAAGTCTTCTCTCAATCAAAGCCACTCTCATTGACCCAATGAGGCATCTGAAGGATTGGCAAATTCCAAGCAATGTGACACAATCAGGATCACCCCATTGTAACTGGACTGGAGTTGGTTGCAACTTTAAAGGCTATGTAGAGAGTCTTGACCTCTCCAACATGAACCTCAGCGGTCGTGTTTCGGACCACGTTCAATCTCTTTCAAGTCTGTCTTATTTCAACATAAGCTGTAACAACTTTGCTTCATCACTGCCCAAGTCACTGTCCAACCTCACCTCTCTCGAGAACTTTGATGTGAGCCAGAACTACTTCACTGGCAGCTTCCCCACTGGTCTTGGAAGAGCTGCAGGCTTGAGATTAATCAATGCATCGAGCAATGATTTTTCAGGTTTTCTTCCTGAGGATATTGGAAATGCAACCATGCTTGAGAGCCTTGATTTTCGAGGGAGCTACTTCGTGAGTCCAATCCCCAAGAGCTTTAAGAATTTGCAGAAACTCAAATTTCTGGGCCTTTCAGGCAATAACTTCACGGGGAGGATTCCAGGATATCTCGGTGATCTAACTTCTCTGGAGACATTGATTATCGGATACAATTTATTTGAAGGTGAGATCCCTGCAGAGTTTGGGAACCTGATCACTCTTCAATACCTTGACTTGGCTGTAGGAAGTCTCAGTGGACAAATTCCAGCTGAATTGGGTAAGCTGACAAAACTCAACACAATTTACTTGTACCATAACAACTTCACAGGAAAAATTCCTCCTGAACTTGGAGACGTAACTTCACTGGCATTTTTGGACCTCTCTGACAATCAGATCTCCGGAGAGATTCCGGAAGAACTTGCTAAATTGGAAAACCTGAAGCTCTTAAACCTGATGACGAACAAACTAACTGGACGAGTACCAGAGAAGCTTGGTGAATTGAAAAATTTACAGGTGCTTGAGCTCTGGAAAAATTCCTTACATGGTCCTTTGCCACCATACCTTGGGCAGAACTCTCCTTTACAGTGGTTGGATGTATCCTCTAACGCACTATCTGGGGATATCCCTCCAGGTTTGTGTACAACTGGAAATCTCACTAAATTAATCCTCTTCAATAATTCCTTCACTGGCTCCATTCCAAGTGGACTTGCGAACTGTTTGTCTTTGGTACGTGTTCGGATTCAGAACAATCTTATTTCTGGAACTATTCCAGTTGGCTTTGGAAACCTCCTTGGCCTTCAACGGCTAGAATTCGCAAAGAACAACCTCACTGGGAAAATTCCCTCTGATATTACCTCATCCACATCGCTCTCTTTCATTGATGTATCTTGGAACAACTTTGAGTCATCTCTTCCGTCAGATATTCTTTCTATTCCAACCCTTCAAACCTTCATTGCCTCTCATAACAATTTTGGAGGAGATATCCCAGATGAGTTCCAGGACTGTCCATCTCTCTCTGTATTGGACCTTTCAAACACTCATATTTCTGGCACAATCCCTGAAAGTATTGCTTCTTGTCAAAAATTAGTCAACCTTAACCTTCGAAATAACCACATGACAGGAAAAATCCCAAAATCAATCACAAGCATGCCCACTTTATCTGTTCTTGATCTTTCCAACAACTCATTGACCGGTAGGATTCCTGACAACATTGGCAATTGCCCTGCTCTGGAATTGCTGAACTTGTCCTATAACAAACTTGAGGGTCCAGTACCCTCAAATGGGATGCTGGTGACCATAAATCCTAACGATCTTATTGGCAATGAAGGTCTTTGTGGAGGCATTCTCCCTCCATGTTCTCCAAGTATGGCTGTGACAAGCCATCGAAGGAGCTCGCATGTCAGACACATCATAATAGGTTTTGTGGCTGGCATTTCAGTGATTTTAGCTTTTGGTGCAGCATATTTTGGTGGTAGATGTTTGTACAATAGATGGCACTTATATAACAACTTCTTCTATGATTGGTTCAAACAGAACAATGAAGATTGGCCCTGGAGACTAGTAGCATTCCAGAGGATCAGCTTCACTAGTAGTGAGATTCTGACTTGCATGAAGGAATCAAATGTTATAGGAATGGGGAGCACTGGTATCGTTTACAAAGCTGAAATCCATAGACCTCACGTAACCGTAGCAGTGAAGAAATTGTGGAGGTCACGAACAGACATAGAAGATGGAAATGATGTGTTGAGAGAAGTGGAACTCCTAGGGAGACTTAGGCACAGGAATATAGTAAGGCTGTTGGGGTATGTACACAACGAAAGAAATGTGATGATGGTTTACGAATACATGCCTAACGGGAATCTTGGAACAGCACTACATGGTGAAGAATCTGCGAGGTTGCTTGTTGACTGGGTCTCAAGGTACAACATAGCTCTAGGAGTTGCACAAGGGCTTAACTACCTCCATCATGATTGCCACCCACCAGTTATTCACAGGGATATCAAGTCTAACAACATACTCCTTGACGCAAATTTAGAGGCGAGAATAGCAGACTTCGGGTTGGCAAGGATGATGATTCAAAAGAACGAGACAGTTTCCATGGTGGCTGGATCATATGGATACATCGCACCAGAATATGGATACACTCTGAAGGTTGACGAGAAGATTGACATATACAGCTATGGGGTGGTGCTTTTGGAACTTCTAACTGGCAAAATGCCTTTAGACCCTTCGTTTGAAGAATCTATTGACATAGTCGAATGGATACGGAAGAAGAAAAGCAACAAATCCTTGTTAGAAGCACTGGATCCTGCCATAGCTAGTCAATGCAAACATGTCCAAGAAGAAATGTTGCTTGTACTCCGGATTGCACTTCTATGTACCGCAAAGCTTCCCAAGGAAAGACCACACATGAGAGACATCATCACAATGCTTGGTGAGGCAAAGCCAAGAAGGAAAAGTGTTTGCCATAATGGGGGTCAAGAAAGCAGTAGCATGGAAAAGTCCATTGTCCTTACCACCTCCCCTGCTATAAGTCTTTTGTAG 3102 0.4317 MQNATRLRGSNTKRATTKMQTHLLFFCCYIGLSLAFTEAAADGELSSLLSIKATLIDPMRHLKDWQIPSNVTQSGSPHCNWTGVGCNFKGYVESLDLSNMNLSGRVSDHVQSLSSLSYFNISCNNFASSLPKSLSNLTSLENFDVSQNYFTGSFPTGLGRAAGLRLINASSNDFSGFLPEDIGNATMLESLDFRGSYFVSPIPKSFKNLQKLKFLGLSGNNFTGRIPGYLGDLTSLETLIIGYNLFEGEIPAEFGNLITLQYLDLAVGSLSGQIPAELGKLTKLNTIYLYHNNFTGKIPPELGDVTSLAFLDLSDNQISGEIPEELAKLENLKLLNLMTNKLTGRVPEKLGELKNLQVLELWKNSLHGPLPPYLGQNSPLQWLDVSSNALSGDIPPGLCTTGNLTKLILFNNSFTGSIPSGLANCLSLVRVRIQNNLISGTIPVGFGNLLGLQRLEFAKNNLTGKIPSDITSSTSLSFIDVSWNNFESSLPSDILSIPTLQTFIASHNNFGGDIPDEFQDCPSLSVLDLSNTHISGTIPESIASCQKLVNLNLRNNHMTGKIPKSITSMPTLSVLDLSNNSLTGRIPDNIGNCPALELLNLSYNKLEGPVPSNGMLVTINPNDLIGNEGLCGGILPPCSPSMAVTSHRRSSHVRHIIIGFVAGISVILAFGAAYFGGRCLYNRWHLYNNFFYDWFKQNNEDWPWRLVAFQRISFTSSEILTCMKESNVIGMGSTGIVYKAEIHRPHVTVAVKKLWRSRTDIEDGNDVLREVELLGRLRHRNIVRLLGYVHNERNVMMVYEYMPNGNLGTALHGEESARLLVDWVSRYNIALGVAQGLNYLHHDCHPPVIHRDIKSNNILLDANLEARIADFGLARMMIQKNETVSMVAGSYGYIAPEYGYTLKVDEKIDIYSYGVVLLELLTGKMPLDPSFEESIDIVEWIRKKKSNKSLLEALDPAIASQCKHVQEEMLLVLRIALLCTAKLPKERPHMRDIITMLGEAKPRRKSVCHNGGQESSSMEKSIVLTTSPAISLL 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3430g00026 1033 ProSitePatterns Serine/Threonine protein kinases active-site signature. 848 860 IPR008271 GO:0004672|GO:0006468
Vium3430g00026 1033 SUPERFAMILY Protein kinase-like (PK-like) 719 997 IPR011009 -
Vium3430g00026 1033 Gene3D Ribonuclease Inhibitor 398 639 IPR032675 -
Vium3430g00026 1033 Gene3D Phosphorylase Kinase; domain 1 723 805 - -
Vium3430g00026 1033 Gene3D Ribonuclease Inhibitor 198 295 IPR032675 -
Vium3430g00026 1033 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 197 297 - -
Vium3430g00026 1033 ProSiteProfiles Protein kinase domain profile. 723 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3430g00026 1033 SMART serkin_6 723 997 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3430g00026 1033 PRINTS Leucine-rich repeat signature 308 321 - -
Vium3430g00026 1033 PRINTS Leucine-rich repeat signature 569 582 - -
Vium3430g00026 1033 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 41 196 - -
Vium3430g00026 1033 Gene3D Transferase(Phosphotransferase) domain 1 806 1021 - -
Vium3430g00026 1033 Pfam Leucine rich repeat 547 606 IPR001611 GO:0005515
Vium3430g00026 1033 Pfam Protein kinase domain 725 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3430g00026 1033 Pfam Leucine rich repeat N-terminal domain 42 87 IPR013210 -
Vium3430g00026 1033 SUPERFAMILY RNI-like 270 613 - -
Vium3430g00026 1033 PANTHER RECEPTOR-LIKE PROTEIN 55 423 998 - -
Vium3430g00026 1033 FunFam MDIS1-interacting receptor like kinase 1 723 805 - -
Vium3430g00026 1033 FunFam MDIS1-interacting receptor like kinase 1 806 1015 - -
Vium3430g00026 1033 ProSitePatterns Protein kinases ATP-binding region signature. 729 753 IPR017441 GO:0005524
Vium3430g00026 1033 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 380 642 - -
Vium3430g00026 1033 SUPERFAMILY L domain-like 66 366 - -
Vium3430g00026 1033 SMART LRR_typ_2 305 329 IPR003591 -
Vium3430g00026 1033 SMART LRR_typ_2 209 233 IPR003591 -
Vium3430g00026 1033 SMART LRR_typ_2 113 137 IPR003591 -
Vium3430g00026 1033 SMART LRR_typ_2 569 593 IPR003591 -
Vium3430g00026 1033 SMART LRR_typ_2 353 377 IPR003591 -
Vium3430g00026 1033 Gene3D Ribonuclease Inhibitor 41 197 IPR032675 -
Vium3430g00026 1033 Gene3D Ribonuclease Inhibitor 296 397 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3430g00026 Vium-Chr3430 195170 198903 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3430g00026 22 1012 Receptor kinase-like Gene Family AT1G08590 65.119 0.0 1295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium3430g00026 Pkinase 6.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3430g00026 - - gmx:100817339 1854.34