Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3430g00023 ATGGCTACTTTTAAAGAAGAATGGGAAGCTGTTCTGGACGACCTTGAAACCGAAAGTGCCCACTTACTGGAACAACTTGATGGGGCTGGCATTGAACTTCCTAGCCTTTTTAAGTTGATTGAAAAAGAAGCTCCTAATGTCTGCTCCACTGAAGCGTGGAAAAAGAGGAATCACTGGGTTGGCTCTGTTGCAACTTCAGAAATTGCTGAGTCAATTGCTGATGCCGAGAAGCATCTACAAGTAAACAGACCTGTTAGAAGGCGACATGGTAAATTACTGGAAGAGGGTGCTAGTGGCTTTCTCCAAAAAAAACTTTGTGATGAAACCCAGGAGGCAGTGAAAAATGAAACTGAGGGTGATTGGGATATGTTCAATAAAATAGTTTCCGATGGGAGCGGCATTGATGCTTCATTTGGCAGTAAGCACTGGGCTTCTGTTTATTTGGCCAGCACTCCACAGCAAGCAGCCTTGATGGGACTGAAATTTCCTGGAGTTGATGAGGTTGAGGAGATTGATGATGTTGATGGCAATTCTATGGATCCATTTATTGCAGCTGCCATTGCAAATGAAAGAGAATTAGATCTTTCTGATGAGCAAAGGAGACAATTTAAAAAGGTCAAAGAAGAAGATGATGCAATTGTTGATAAGAAACTTCAAATCCGTTTGAAACATAGGAGGCATAAAAAGATAAGTAAACAGCGAGAAATGAGTACACCTATCCTGTTGACAGACAGCCCTACACAAAAGCCTTCATATGCTGATCATTTAGACCCTGATACAAAAGAAGGAACTAATGATAATGGGAAAGTAGTCTCTGACAATGGCAATGATACATGTGTTCTTATCAAGACTGATAATATTAAAGGTTTGGATGCCAGTCATCATCTTGACAAAGAAAAGCTAACAAGTAGTGATGGCTTGTCAGATCCACCCAAATCCTCAGGGGATGGTGTTATTGAACAGAGAGGAATCAAACGTGTAAGCGGGGGTGAGCTTGATGCTGAAAATAAAAAATCTCGGCTTGTTGTTATTGATAGTGATGATGAAGCAGGAGTCACTAAGGAGAAATTAGATTGCAATACTCAAGAAGTAAAAGATGAATTAGGTAACAATGGTACTGGTTCTCTTCCTTCAGAGTGTCTGGATGAAAAATTTTTGTGCACCGTTTGTGATAAAGTCGCTCTTGAAGTTCATCCACACCCTCTCTTGAAAGTAATTACTTGTGGAGATTGCAACCGCTTATTAAAAGAAAAGGCACATGAAAAGGATCTGGGACAAGATTGTTCGGAGGGTTACTGTACATGGTGTGGAGGAAACATTGCATTAGTTAGTTGTAAATTATGCAATATTTTATTCTGCACCAAGTGTTTAAAGAAGAATATTGGTGTAGAATTGGTTTCTGAAACTCAGGCCACTAGCTGGCATTGTTGTTGTTGTCGTCCAAATCTTTTGCAAAGACTGTCCTTGCAACTAGAGAAAGCTGTGGGGTCTGCTCGTATAGTAGTTTCTAGTTCTAGTAGTGATTCAGATGATTCAGATGATTCAGACGATTCAGATGATTCAAATTATTCAGATGCACAGATTAATGTTACAATGAGCTCCAAGCGAAGACCCAAAAAGAAGATTCGTAGGATACTTGATGATACTGAATTAGGAGAAGAGACAAAAAGGAAAATAGCAATTGAAAAGGAACGTCAGGAACGCCTGAAGTCTTTGAGAGGACAGTTTTCTGTTTCGTCAATTGAGATGAGCCCTGACGGATGTAATGGGAATTTATCAGAAGGTGCAAATGTTGAAGTTCTTGGTGATGCTCTAGCAGGTTACATAGTGAATGTTGTGAGGGAAAAAGGTGAAGAAGCTGTTAGAATTCCTCCTAGCATTTCAGCTAAACTGAAGGCGCATCAGATATCTGGAATAAGATTCATGTGGGAAAATATCATACAGTCAATCAGAAAAGTGAAGTCTGGGGATAAAGGTCTTGGATGTATTTTAGCTCATACCATGGGCCTTGGTAAAACATTTCAGGTTATAGCTTTTTTGTACACTGCAATGAGATGTGTTGATCTGGGGTTAAGAACAGCACTTATAGTCACACCTGTCAACGTACTACATAATTGGCGGCAAGAGTTCATTAAGTGGAGACCTTCTGAGTTAAAGCCACTCAGAGTCTTTATGCTGGAAGACGTACCAAGGGATAGAAGAGCGGAATTGCTTAAAAAATGGAGAGTTAAAGGTGGTGTCTTTTTGATTGGTTATACTGCTTTCCGAAATTTGTCTTTTGGGAAGCATGTGAAAGATCGGAACATGGCCAGAGAAATGTGCCATGCTTTGCAGGATGGTCCTGACATTCTTGTTTGTGATGAAGCCCATATGATAAAAAATACTAAGGCTGATGTAACACAGGCCTTGAAGCAAGTAAAGTGCCAGAGAAGAATTGCGCTTACTGGGTCACCCCTTCAAAACAATGTCATGGAGTATTACTGTATGGTTGATTTTGTAAGAGAAGGTTTTCTTGGAAGCAGCCATGAATTTCGGAACCGCTTCCAAAATCCTATAGAGAATGGACAACACACCAATTCAACTCTGACAGATGTGAAAATTATGAACCAGAGGTCTCATATCCTCTATGAAGAGTTAAAAGGCTTTGTTCAAAGAATGGACATGAATGTGGTGAAGAAGGATCTACCACCAAAAACTGTGTTTGTGATAACTGTTAAGCTATCTCCCTTGCAGAGAAAATTGTATAAGAGATTCCTTGATGTGCACGGGTTCACTACCCAGGAGCATCCTGAATTGTTAAGGAAGAGATGTTTTTTTGCTGGGTACCAGGCATTAGCACGGATATGGAACCACCCTGGGATCTTGCAGTTGACAAAAGAAGCCAAGGAATATGCAAAAGAAGAGGATGCTGTTGAGAATTTTCTTGTGGATGATAGTTCAAGTGACGAAAATTCTGATTATAATGTTCTTGCTGGAGAGAAGATGGGGTTTGCAAATGACTTATTGCAAAGGAAAGATGGTAATGGCTTTTTCCTCAAGGGTTGGTGGAATGACCTTCTTCATGGAAAAATATATAAAGAGATCGATCACAGTGGCAAAATGGTTTTGCTGATGGAGATACTAACTATGAGTTCTGATGTGGGTGATAAGGTATTAGTTTTTAGTCAGAGCATACCAACCCTAGACCTCATTGAACTTTATCTCTCAAGGATACGTCGACGTGGAAAACGAGGAAAGTTTTGGAAGAAGGGGAAAGATTGGTATAGGTTGGATGGGAGGACAGTGAGTTCTGAGAGGCAGAAGCTTGTTGAGAGATTTAATGAGCCTTTGAATAAGAGGGTAAAGTGCACTCTGATTTCAACTAGAGCTGGCTCATTGGGTATAAATCTTCAAGCAGCTAATCGTGTTGTTATAGTTGATGGTTCTTGGAATCCAACATATGATCTCCAGGCTATCTATCGATCATGGAGGTATGGGCAGACAAAGCCTGTATTTGCTTATCGATTGCTAGCTCATGGAACTATGGAAGAGAAGATATACAAGCGCCAGGTCACAAAGGAGGGGCTTGCTGCTAGGGTGGTTGATAGGCAGCAGGTGCATAGGACCATTTCTAAAGAAGAAATGCTGCATCTCTTTGAATTTGGTGATGATGACAACCCTGAGACTTTAGGCGATCTAGGTCAAGAAAACGAGCACCAAGAAAACCCAATTTCGGTTGGGCATTCTCTGAAACACACAGCACCACATTCAAATGGAAGTAGTTATTCTGATAAGTTGATGGAAAGCTTACTTAGCAAGCATCATCCGTGGTAG 3813 0.4057 MATFKEEWEAVLDDLETESAHLLEQLDGAGIELPSLFKLIEKEAPNVCSTEAWKKRNHWVGSVATSEIAESIADAEKHLQVNRPVRRRHGKLLEEGASGFLQKKLCDETQEAVKNETEGDWDMFNKIVSDGSGIDASFGSKHWASVYLASTPQQAALMGLKFPGVDEVEEIDDVDGNSMDPFIAAAIANERELDLSDEQRRQFKKVKEEDDAIVDKKLQIRLKHRRHKKISKQREMSTPILLTDSPTQKPSYADHLDPDTKEGTNDNGKVVSDNGNDTCVLIKTDNIKGLDASHHLDKEKLTSSDGLSDPPKSSGDGVIEQRGIKRVSGGELDAENKKSRLVVIDSDDEAGVTKEKLDCNTQEVKDELGNNGTGSLPSECLDEKFLCTVCDKVALEVHPHPLLKVITCGDCNRLLKEKAHEKDLGQDCSEGYCTWCGGNIALVSCKLCNILFCTKCLKKNIGVELVSETQATSWHCCCCRPNLLQRLSLQLEKAVGSARIVVSSSSSDSDDSDDSDDSDDSNYSDAQINVTMSSKRRPKKKIRRILDDTELGEETKRKIAIEKERQERLKSLRGQFSVSSIEMSPDGCNGNLSEGANVEVLGDALAGYIVNVVREKGEEAVRIPPSISAKLKAHQISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRCVDLGLRTALIVTPVNVLHNWRQEFIKWRPSELKPLRVFMLEDVPRDRRAELLKKWRVKGGVFLIGYTAFRNLSFGKHVKDRNMAREMCHALQDGPDILVCDEAHMIKNTKADVTQALKQVKCQRRIALTGSPLQNNVMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLTDVKIMNQRSHILYEELKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRKLYKRFLDVHGFTTQEHPELLRKRCFFAGYQALARIWNHPGILQLTKEAKEYAKEEDAVENFLVDDSSSDENSDYNVLAGEKMGFANDLLQRKDGNGFFLKGWWNDLLHGKIYKEIDHSGKMVLLMEILTMSSDVGDKVLVFSQSIPTLDLIELYLSRIRRRGKRGKFWKKGKDWYRLDGRTVSSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLQAANRVVIVDGSWNPTYDLQAIYRSWRYGQTKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDDNPETLGDLGQENEHQENPISVGHSLKHTAPHSNGSSYSDKLMESLLSKHHPW 1270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3430g00023 1270 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 653 836 IPR014001 -
Vium3430g00023 1270 Coils Coil 5 25 - -
Vium3430g00023 1270 CDD SF2_C_SNF 1027 1170 - -
Vium3430g00023 1270 Pfam SNF2-related domain 654 954 IPR000330 GO:0005524|GO:0140658
Vium3430g00023 1270 Gene3D - 1017 1250 IPR027417 -
Vium3430g00023 1270 MobiDBLite consensus disorder prediction 502 539 - -
Vium3430g00023 1270 SMART helicmild6 1062 1159 IPR001650 -
Vium3430g00023 1270 SMART ultradead3 627 848 IPR014001 -
Vium3430g00023 1270 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1039 1207 IPR001650 -
Vium3430g00023 1270 MobiDBLite consensus disorder prediction 299 322 - -
Vium3430g00023 1270 Pfam Helicase conserved C-terminal domain 1035 1159 IPR001650 -
Vium3430g00023 1270 ProSiteProfiles ADD domain profile. 375 507 IPR025766 -
Vium3430g00023 1270 MobiDBLite consensus disorder prediction 224 272 - -
Vium3430g00023 1270 MobiDBLite consensus disorder prediction 236 250 - -
Vium3430g00023 1270 PANTHER RAD54-LIKE 1 1269 IPR044574 GO:0016887
Vium3430g00023 1270 CDD ADDz_ATRX 383 481 - -
Vium3430g00023 1270 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 617 885 IPR027417 -
Vium3430g00023 1270 Gene3D - 889 1003 IPR027417 -
Vium3430g00023 1270 Gene3D - 604 885 IPR038718 -
Vium3430g00023 1270 Gene3D - 908 985 - -
Vium3430g00023 1270 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 891 1226 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3430g00023 Vium-Chr3430 128759 154102 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3430g00023 556 1212 RAD5 or RAD16-like Gene Family AT5G43530 22.663 3.23e-29 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium3430g00023 SNF2_N 3.9e-50 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3430g00023 K10779 - gmx:100794911 2223.36