Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3430g00022 ATGGAGGGAAAAACCGAGGATGAAGTGGTGGATATTGAGAGTGCTTCCAGTGGTTCTTTCAATGACGATTCAGATGATGATGAATCTTTGGTTCCCGAAATAGATGATGGAGTGCATCTTGAGGAGCCGTTAACAGAAGAGGAAATTCAAGATCTTATTTCTGAGTTGTTAGAAGTTGAGAGTAAGGCTGCAGAGGCGCAAGAAGCTCTTGAAGAGGAGTCTCTTTCTAAAGTGGAGAGTGAAGTTAGACAAGAACTCAAGCAAAGTCTTCAGGGGGATGATTTGGAAACTGCTGTTGATAATGAGATGGCTACTTTTAAAGAAGAATGGGAAGCTGTTCTGGACGACCTTGAAACCGAAAGTGCCCACTTACTGGAACAACTTGATGGGGCTGGCATTGAACTTCCTAGCCTTTTTAAGTTGATTGAAAAAGAAGCTCCTAATGTCTGCTCCACTGAAGCGTGGAAAAAGAGGAATCACTGGGTTGGCTCTGTTGCAACTTCAGAAATTGCTGAGTCAATTGCTGATGCCGAGAAGCATCTACAAGTAAACAGACCTGTTAGAAGGCGACATGGTAAATTACTGGAAGAGGGTGCTAGTGGCTTTCTCCAAAAAAAACTTTGTGATGAAACCCAGGAGGCAGTGAAAAATGAAACTGAGGGTGATTGGGATATGTTCAATAAAATAGTTTCCGATGGGAGCGGCATTGATGCTTCATTTGGCAGTAAGCACTGGGCTTCTGTTTATTTGGCCAGCACTCCACAGCAAGCAGCCTTGATGGGACTGAAATTTCCTGGAGTTGATGAGGTTGAGGAGATTGATGATGTTGATGGCAATTCTATGGATCCATTTATTGCAGCTGCCATTGCAAATGAAAGAGAATTAGATCTTTCTGATGAGCAAAGGAGACAATTTAAAAAGGTCAAAGAAGAAGATGATGCAATTGTTGATAAGAAACTTCAAATCCGTTTGAAACATAGGAGGCATAAAAAGATAAGTAAACAGCGAGAAATGAGTACACCTATCCTGTTGACAGACAGCCCTACACAAAAGCCTTCATATGCTGATCATTTAGACCCTGATACAAAAGAAGGAACTAATGATAATGGGAAAGTAGTCTCTGACAATGGCAATGATACATGTGTTCTTATCAAGACTGATAATATTAAAGGTTTGGATGCCAGTCATCATCTTGACAAAGAAAAGCTAACAAGTAGTGATGGCTTGTCAGATCCACCCAAATCCTCAGGGGATGGTGTTATTGAACAGAGAGGAATCAAACGTGTAAGCGGGGGTGAGCTTGATGCTGAAAATAAAAAATCTCGGCTTGTTGTTATTGATAGTGATGATGAAGCAGGAGTCACTAAGGAGAAATTAGATTGCAATACTCAAGAAGTAAAAGATGAATTAGGTAACAATGGTACTGGTTCTCTTCCTTCAGAGTGTCTGGATGAAAAATTTTTGTGCACCGTTTGTGATAAAGTCGCTCTTGAAGTTCATCCACACCCTCTCTTGAAAGTAATTACTTGTGGAGATTGCAACCGCTTATTAAAAGAAAAGGCACATGAAAAGGATCTGGGACAAGATTGTTCGGAGGGTTACTGTACATGGTGTGGAGGAAACATTGCATTAGTTAGTTGTAAATTATGCAATATTTTATTCTGCACCAAGTGTTTAAAGAAGAATATTGGTGTAGAATTGGTTTCTGAAACTCAGGCCACTAGCTGGCATTGTTGTTGTTGTCGTCCAAATCTTTTGCAAAGACTGTCCTTGCAACTAGAGAAAGCTGTGGGGTCTGCTCGTATAGTAGTTTCTAGTTCTAGTAGTGATTCAGATGATTCAGATGATTCAGACGATTCAGATGATTCAAATTATTCAGATGCACAGATTAATGTTACAATGAGCTCCAAGCGAAGACCCAAAAAGAAGATTCGTAGGATACTTGATGATACTGAATTAGGAGAAGAGACAAAAAGGAAAATAGCAATTGAAAAGGAACGTCAGGAACGCCTGAAGTCTTTGAGAGGACAGTTTTCTGTTTCGTCAATTGAGATGAGCCCTGACGGATGTAATGGGAATTTATCAGAAGGTGCAAATGTTGAAGTTCTTGGTGATGCTCTAGCAGGTTACATAGTGAATGTTGTGAGGGAAAAAGGTGAAGAAGCTGTTAGAATTCCTCCTAGCATTTCAGCTAAACTGAAGGCGCATCAGATATCTGGAATAAGATTCATGTGGGAAAATATCATACAGTCAATCAGAAAAGTGAAGTCTGGGGATAAAGGTCTTGGATGTATTTTAGCTCATACCATGGGCCTTGGTAAAACATTTCAGGTTATAGCTTTTTTGTACACTGCAATGAGATGTGTTGATCTGGGGTTAAGAACAGCACTTATAGTCACACCTGTCAACGTACTACATAATTGGCGGCAAGAGTTCATTAAGTGGAGACCTTCTGAGTTAAAGCCACTCAGAGTCTTTATGCTGGAAGACGTACCAAGGGATAGAAGAGCGGAATTGCTTAAAAAATGGAGAGTTAAAGGTGGTGTCTTTTTGATTGGTTATACTGCTTTCCGAAATTTGTCTTTTGGGAAGCATGTGAAAGATCGGAACATGGCCAGAGAAATGTGCCATGCTTTGCAGGATGGTCCTGACATTCTTGTTTGTGATGAAGCCCATATGATAAAAAATACTAAGGCTGATGTAACACAGGCCTTGAAGCAAGTAAAGTGCCAGAGAAGAATTGCGCTTACTGGGTCACCCCTTCAAAACAATGTCATGGAGTATTACTGTATGGTTGATTTTGTAAGAGAAGGTTTTCTTGGAAGCAGCCATGAATTTCGGAACCGCTTCCAAAATCCTATAGAGAATGGACAACACACCAATTCAACTCTGACAGATGTGAAAATTATGAACCAGAGGTCTCATATCCTCTATGAAGAGTTAAAAGGCTTTGTTCAAAGAATGGACATGAATGTGGTGAAGAAGGATCTACCACCAAAAACTGTGTTTGTGATAACTGTTAAGCTATCTCCCTTGCAGAGAAAATTGTATAAGAGATTCCTTGATGTGCACGGGTTCACTACCCAGGAGCATCCTGAATTGTTAAGGAAGAGATGTTTTTTTGCTGGGTACCAGGCATTAGCACGGATATGGAACCACCCTGGGATCTTGCAGTTGACAAAAGAAGCCAAGGAATATGCAAAAGAAGAGGATGCTGTTGAGAATTTTCTTGTGGATGATAGTTCAAGTGACGAAAATTCTGATTATAATGTTCTTGCTGGAGAGAAGATGGGGTTTGCAAATGACTTATTGCAAAGGAAAGATGGTAATGGCTTTTTCCTCAAGGGTTGGTGGAATGACCTTCTTCATGGAAAAATATATAAAGAGATCGATCACAGTGGCAAAATGGTTTTGCTGATGGAGATACTAACTATGAGTTCTGATGTGGGTGATAAGGTATTAGTTTTTAGTCAGAGCATACCAACCCTAGACCTCATTGAACTTTATCTCTCAAGGATACGTCGACGTGGAAAACGAGGAAAGTTTTGGAAGAAGGGGAAAGATTGGTATAGGTTGGATGGGAGGACAGTGAGTTCTGAGAGGCAGAAGCTTGTTGAGAGATTTAATGAGCCTTTGAATAAGAGGGTAAAGTGCACTCTGATTTCAACTAGAGCTGGCTCATTGGGTATAAATCTTCAAGCAGCTAATCGTGTTGTTATAGTTGATGGTTCTTGGAATCCAACATATGATCTCCAGGCTATCTATCGATCATGGAGGTATGGGCAGACAAAGCCTGTATTTGCTTATCGATTGCTAGCTCATGGAACTATGGAAGAGAAGATATACAAGCGCCAGGTCACAAAGGAGGGGCTTGCTGCTAGGGTGGTTGATAGGCAGCAGGTGCATAGGACCATTTCTAAAGAAGAAATGCTGCATCTCTTTGAATTTGGTGATGATGACAACCCTGAGACTTTAGGCGATCTAGGTCAAGAAAACGAGCACCAAGAAAACCCAATTTCGGTTGGGCATTCTCTGAAACACACAGCACCACATTCAAATGGAAGTAGTTATTCTGATAAGTTGATGGAAAGCTTACTTAGCAAGCATCATCCGTGGTAG 4119 0.4071 MEGKTEDEVVDIESASSGSFNDDSDDDESLVPEIDDGVHLEEPLTEEEIQDLISELLEVESKAAEAQEALEEESLSKVESEVRQELKQSLQGDDLETAVDNEMATFKEEWEAVLDDLETESAHLLEQLDGAGIELPSLFKLIEKEAPNVCSTEAWKKRNHWVGSVATSEIAESIADAEKHLQVNRPVRRRHGKLLEEGASGFLQKKLCDETQEAVKNETEGDWDMFNKIVSDGSGIDASFGSKHWASVYLASTPQQAALMGLKFPGVDEVEEIDDVDGNSMDPFIAAAIANERELDLSDEQRRQFKKVKEEDDAIVDKKLQIRLKHRRHKKISKQREMSTPILLTDSPTQKPSYADHLDPDTKEGTNDNGKVVSDNGNDTCVLIKTDNIKGLDASHHLDKEKLTSSDGLSDPPKSSGDGVIEQRGIKRVSGGELDAENKKSRLVVIDSDDEAGVTKEKLDCNTQEVKDELGNNGTGSLPSECLDEKFLCTVCDKVALEVHPHPLLKVITCGDCNRLLKEKAHEKDLGQDCSEGYCTWCGGNIALVSCKLCNILFCTKCLKKNIGVELVSETQATSWHCCCCRPNLLQRLSLQLEKAVGSARIVVSSSSSDSDDSDDSDDSDDSNYSDAQINVTMSSKRRPKKKIRRILDDTELGEETKRKIAIEKERQERLKSLRGQFSVSSIEMSPDGCNGNLSEGANVEVLGDALAGYIVNVVREKGEEAVRIPPSISAKLKAHQISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRCVDLGLRTALIVTPVNVLHNWRQEFIKWRPSELKPLRVFMLEDVPRDRRAELLKKWRVKGGVFLIGYTAFRNLSFGKHVKDRNMAREMCHALQDGPDILVCDEAHMIKNTKADVTQALKQVKCQRRIALTGSPLQNNVMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLTDVKIMNQRSHILYEELKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRKLYKRFLDVHGFTTQEHPELLRKRCFFAGYQALARIWNHPGILQLTKEAKEYAKEEDAVENFLVDDSSSDENSDYNVLAGEKMGFANDLLQRKDGNGFFLKGWWNDLLHGKIYKEIDHSGKMVLLMEILTMSSDVGDKVLVFSQSIPTLDLIELYLSRIRRRGKRGKFWKKGKDWYRLDGRTVSSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLQAANRVVIVDGSWNPTYDLQAIYRSWRYGQTKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDDNPETLGDLGQENEHQENPISVGHSLKHTAPHSNGSSYSDKLMESLLSKHHPW 1372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3430g00022 1372 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1141 1309 IPR001650 -
Vium3430g00022 1372 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 993 1328 IPR027417 -
Vium3430g00022 1372 SMART helicmild6 1164 1261 IPR001650 -
Vium3430g00022 1372 Pfam SNF2-related domain 756 1056 IPR000330 GO:0005524|GO:0140658
Vium3430g00022 1372 MobiDBLite consensus disorder prediction 401 433 - -
Vium3430g00022 1372 Gene3D - 1119 1352 IPR027417 -
Vium3430g00022 1372 Pfam Helicase conserved C-terminal domain 1137 1261 IPR001650 -
Vium3430g00022 1372 ProSiteProfiles ADD domain profile. 477 609 IPR025766 -
Vium3430g00022 1372 CDD ADDz_ATRX 485 583 - -
Vium3430g00022 1372 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 755 938 IPR014001 -
Vium3430g00022 1372 Coils Coil 107 127 - -
Vium3430g00022 1372 CDD SF2_C_SNF 1129 1272 - -
Vium3430g00022 1372 Gene3D - 991 1105 IPR027417 -
Vium3430g00022 1372 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 719 987 IPR027417 -
Vium3430g00022 1372 PANTHER RAD54-LIKE 16 1371 IPR044574 GO:0016887
Vium3430g00022 1372 MobiDBLite consensus disorder prediction 604 641 - -
Vium3430g00022 1372 Gene3D - 706 987 IPR038718 -
Vium3430g00022 1372 MobiDBLite consensus disorder prediction 1 43 - -
Vium3430g00022 1372 Gene3D - 1010 1087 - -
Vium3430g00022 1372 MobiDBLite consensus disorder prediction 338 352 - -
Vium3430g00022 1372 Coils Coil 49 76 - -
Vium3430g00022 1372 SMART ultradead3 729 950 IPR014001 -
Vium3430g00022 1372 MobiDBLite consensus disorder prediction 326 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3430g00022 Vium-Chr3430 128759 155922 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3430g00022 658 1314 RAD5 or RAD16-like Gene Family AT5G43530 22.392 2.20e-29 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium3430g00022 SNF2_N 4.5e-50 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3430g00022 K10779 - gmx:100794911 2372.43