Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3430g00021 TATGAGTTAACGTATAGGTTGGATGGGAGGACAGTGAGTTCTGAGAGGCAGAAGCTTGTTGAGAGATTTAATGAGCCTTTGAATAAGAGGGTAAAGTGCACTCTGATTTCAACTAGAGCTGGCTCGTTGGGTATAAATCTTCAAGCAGCTAATCGTGTTGTTATAGTTGATGGTTCTTGGAATCCAACATATGATCTCCAGGCTATCTATCGATCATGGAGGTATGGGCAGACAAAGCCTGTATTTGCTTATCGATTGCTAGCTCATGGAACTATGGAAGAGAAGATATACAAGCGCCAGGTCACAAAGGAGGGGCTTGCTGCTAGGGTGGTTGATAGGCAGCAGGTGCATAGGACCATTTCTAAAGAAGAAATGCTGCATCTCTTTGAATTTGGTGATGATGACAACCCTGAGACTTTAGGCGATCTAGGTCAAGAAAACGAGCACCAAGAAAACCCAATTTCGGTTGGGCATTCTCTGAAACACACAGCACCACATTCAAATGGAAGTAGTTATTCTGATAAGTTGATGGAAAGCTTACTTAGCAAGCATCATCCGTGGTGGATTGCCAATTATCATGAACATGAATCCCTGTTGCAAGAAAATGAAGAGGAAAAACTATCAAAAGAGGAGCAAGATATGGCTTGGGAGGTTTACCGAAAATCCCTGGAATGGGAAGAAGTCCAGAGAGTACCACTAGGTGAGTCTATTGTGCCTATTCAGAAACCAGAAATTCCAAATGACGTGCCCCTCGTATCAGAAACCTGTAACATCTTGCCAAGTAAACTAAGCCGACGTTTCGCATCACGGAAATGCACAAACCTTGCGCACATGTTGACACTTCGAAGCCAGGGAACAAAATTCGGTTGCAGTACTATCTGTGGGGAATGTGCCCAGGAGATTAGGTGGGAAGACTTGAAGAAGAGATAG 930 0.4376 YELTYRLDGRTVSSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLQAANRVVIVDGSWNPTYDLQAIYRSWRYGQTKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDDNPETLGDLGQENEHQENPISVGHSLKHTAPHSNGSSYSDKLMESLLSKHHPWWIANYHEHESLLQENEEEKLSKEEQDMAWEVYRKSLEWEEVQRVPLGESIVPIQKPEIPNDVPLVSETCNILPSKLSRRFASRKCTNLAHMLTLRSQGTKFGCSTICGECAQEIRWEDLKKR 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3430g00021 309 SMART helicmild6 1 76 IPR001650 -
Vium3430g00021 309 Coils Coil 192 212 - -
Vium3430g00021 309 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 145 IPR027417 -
Vium3430g00021 309 CDD SF2_C_SNF 5 87 - -
Vium3430g00021 309 Gene3D - 3 177 IPR027417 -
Vium3430g00021 309 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 124 IPR001650 -
Vium3430g00021 309 PANTHER RAD54-LIKE 5 307 IPR044574 GO:0016887
Vium3430g00021 309 Pfam Helicase conserved C-terminal domain 6 76 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3430g00021 Vium-Chr3430 118339 125628 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3430g00021 6 129 RAD5 or RAD16-like Gene Family AT5G43530 36.290 1.54e-17 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3430g00021 K10779 - vum:124834464 609.372