Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3430g00008 ACATCTGTGGTCTGTCTCGACTGCGACTGCGGATTCATCGAAGAAATTGAACACCCGCCGCGCTCAGTCCACCTCGACCCTTGCCGTCGTCGCTTCCCTGCTGCCGCCATGTACATGATCGGCCAACGCCCTGCCTCCGACAACGTTGTCCGTCCCTTCCTGCGCCGCACCCGCCACAACGGTGGTGACCGCTCCCCCTTCAACCCCGTTATCGTCCTCCGCGGCAGCGCAGCTGCCACCTCCGCTACCAACGAGGAGGAAAGTCGAGGCTTTGAGCTCTTCTACGACGATGGTGCCGGTTCTGGCTTGAGACCCTTGCCTCCGAGCATGTCAGAGTTTCTACTCGGATTTGGATTCGATAGGTTTCTGGAGCAACTGTCTCAGATTGAGATCAACGGTATTGGAAGGTATGAGCACCCTCCTGCGTCAAAAGCAGCCATAGATTCCTTACGAACCATCGATATTGATAACACTCACTTAGCCATGGAATCACATTGTGCGGTGTGCAAAGAAGCTTTTGAATTAGGTACCACGGTGAGGGAAATGCCGTGTAAGCATATATATCACCCTGAATGCATCTTACCATGGCTAGCTTCAAAGTTACACGTTTTCCCTCTCTTCTTCTACGACAATGGAGCTGTGGTGGCGGGCGTTGAAGCCGTGATGGTGGTGGTGTGA 678 0.5413 TSVVCLDCDCGFIEEIEHPPRSVHLDPCRRRFPAAAMYMIGQRPASDNVVRPFLRRTRHNGGDRSPFNPVIVLRGSAAATSATNEEESRGFELFYDDGAGSGLRPLPPSMSEFLLGFGFDRFLEQLSQIEINGIGRYEHPPASKAAIDSLRTIDIDNTHLAMESHCAVCKEAFELGTTVREMPCKHIYHPECILPWLASKLHVFPLFFYDNGAVVAGVEAVMVVV 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3430g00008 225 Pfam Ring finger domain 165 200 IPR001841 -
Vium3430g00008 225 SUPERFAMILY RING/U-box 146 200 - -
Vium3430g00008 225 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 89 198 - -
Vium3430g00008 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 205 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3430g00008 Vium-Chr3430 18330 19310 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3430g00008 105 200 C3H Transcription Factor Family AT5G01980 35.417 1.39e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3430g00008 K11982 - gmx:100807324 344.354