Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3430g00005 ATGACGACACCGCCGGCTTCCTCATCAGCTTCGCAATCGCAGTTTGCCTATTCAAACCCTTCCTATTTTCCCGTTCCCTTTCACCTGCAGCAACCTGCAACTACTCATTACGCTGCACCCTACGTCGCCGCCCCCTCCGTGCAAATCCCCGCTCCTCCCGTCGTCGGTCCGGTTGCGCCCGCGCCGGTTCCCGCTGTATACTCCGCCGTGCCGCAATACCAGGCGCAGCAGCTATTTGAAAGGGATGCACAGATAATTACGCCGGAGGCTCTTGAGAATGTTAAGGCAGCGATTGCGAGCAGCGACGTGGAACACAAAACCGATGCCAAAAGGAAAGCGGTTCCTCGCAAAGCTGCTGGCCAATCGTGGGAGGATCCCATCCTCGCTGAGTGGCCAGAAGATGACTATCGGCTCTTCTGTGGTGATCTTGGTAATGAAGTGAATGATGATGTTCTTTCAAAAGCTTTTTCCCGATTTCCTTCCTTTAACATGGCACGAGTTGTCAGAGATAAGCGTACTGGTAAAACTAAGGGTTATGGATTTGTGAGCTTTGCCAATCCTTCTGACCTTGCTGGTGCTCTTAAAGAAATGAATGGAAAATATGTTGGCAATCGGCCAATAAAACTACGCAAGAGTAATTGGAAGGAGAGGACTGATTATGAAGCACTGGAGAAACAGAAGAATCACATTCAAAAGAAACCAAAATTGTCCAGGAAAGGTGTGCTGCACAAGTAA 735 0.498 MTTPPASSSASQSQFAYSNPSYFPVPFHLQQPATTHYAAPYVAAPSVQIPAPPVVGPVAPAPVPAVYSAVPQYQAQQLFERDAQIITPEALENVKAAIASSDVEHKTDAKRKAVPRKAAGQSWEDPILAEWPEDDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFANPSDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALEKQKNHIQKKPKLSRKGVLHK 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3430g00005 244 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 138 208 IPR000504 GO:0003723
Vium3430g00005 244 CDD RRM_RBM42 130 212 IPR034215 -
Vium3430g00005 244 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 63 222 - -
Vium3430g00005 244 Gene3D - 83 228 IPR012677 -
Vium3430g00005 244 FunFam RNA-binding protein 42 71 221 - -
Vium3430g00005 244 SUPERFAMILY RNA-binding domain, RBD 119 216 IPR035979 GO:0003676
Vium3430g00005 244 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 136 214 IPR000504 GO:0003723
Vium3430g00005 244 MobiDBLite consensus disorder prediction 225 244 - -
Vium3430g00005 244 SMART rrm1_1 137 210 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3430g00005 Vium-Chr3430 14706 18116 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3430g00005 138 236 Eukaryotic Initiation Factors Gene Family AT1G71770 28.000 4.91e-07 48.5