Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3427g00007 ATGGCCAACAACTTTAGCACCACCCTCTTCCCTCTCTCGGCTTCAAACGCAGTTCAAAAAAGCGAAGCTTTAACGGTGAAAGGAATGAGCCAACTTGGGTTGAGCCAAAGGGTCAAGAGTCTCAGAAAAATCTCATTGGCCGCGAAAAGAAGACCAGCGATGTTTCATGGCACTGAAAAAGGGAAGGGCAAAGAGGTTCTGAGGGCCCACTTTTCGGATCTGTCACCAACTTCTCTAGATGTTGATGGTGGCGACACTGAGAGCATCTTACGAAAGAGTCAGATAGTGAGAGAAAAACTGGAAAATGCAGTTTGCAACACTCGCACTGAGGAGAATAATAAGAAAGCCAAGGAAATGCTGCAAGCCAAACTTCTCTTAGCATTCGCTTCTGAAAGTGATGCTGCTGTCGGTGAAACTTCCTCAACACCCCAAAGGGGAAGTTTTTTGAACCATTTTGCTTATCCCTTTCCGAACCGTAGCAGTGCCCATTTTTCGCAGGCAGACACAGAGGTTGACAAAAGCATCACCCTTTGTGCAACTCCATTGAGGGTTTGTTTGCCCGGCGAAAGCGTTTATGGGGGGCAGAAGACGAGAAACGGCAGCGTGGGTGAAGCGGTTGAGGATGTTTGTTGTAGCAGGGGCGATGCGAGCGAATACGACGGTCGGATGCACAGCAATCCGTACAAGAAGAACGGGCCGTACACGTGTCCGAAGTGCGGGTGCGTGTTCGAGACGTCGCAGCGGTTTGCGGCGCACGTGAGTTCGAGGCACTACAGGTACGAGACGAAGAGTGAGAGGAAGAAGAGAATGATGGCGAAAATCCGAAGGAGGAGTGTGCGTCTTGAATGGGAAAACGGTGCACTGAGTGTTGTTGGTGACGATGGTTGTAGAAGAAATAGCAGTGTCTTTGCTCCTGCTGAAGTGAAGATTGAAACTGAGAGTGTTGTGAGGCTTCAGCTTGCTCCTCCTCCTGGATGGCCAAAAATAACTGAAGCTGTCAGAATAAAATTGGAGCCATTAGACAATTGA 1029 0.4908 MANNFSTTLFPLSASNAVQKSEALTVKGMSQLGLSQRVKSLRKISLAAKRRPAMFHGTEKGKGKEVLRAHFSDLSPTSLDVDGGDTESILRKSQIVREKLENAVCNTRTEENNKKAKEMLQAKLLLAFASESDAAVGETSSTPQRGSFLNHFAYPFPNRSSAHFSQADTEVDKSITLCATPLRVCLPGESVYGGQKTRNGSVGEAVEDVCCSRGDASEYDGRMHSNPYKKNGPYTCPKCGCVFETSQRFAAHVSSRHYRYETKSERKKRMMAKIRRRSVRLEWENGALSVVGDDGCRRNSSVFAPAEVKIETESVVRLQLAPPPGWPKITEAVRIKLEPLDN 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3427g00007 342 ProSiteProfiles Zinc finger C2H2 type domain profile. 234 262 IPR013087 -
Vium3427g00007 342 ProSitePatterns Zinc finger C2H2 type domain signature. 236 257 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3427g00007 201 284 C2H2 Transcription Factor Family AT2G18490 49.425 9.34e-22 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium3427g00007 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3427g00007 - - vun:114189574 545.043