Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3425g00002 ATGGGTCGGCTTAATCTCATACTTGTGTGGTCGCTCTCATTAACACTGTCCCTTTATAATCTACATCCAACCTCTGCCCAGCTTAGTCCAAACCACTACGCTAATGTATGCCCCAATCTCGAAACCATCGTTAGACAGGTAGTTACCACCAAGTTTCAGCAAACCTTTGTCACTGTTCCAGCCACCCTTCGTCTCTTCTTCCACGATTGCTTTGTCCAGGGTTGTGATGCCTCGGTTTTGGTGGCATCAACTGGGAACAACCAAGCGGAGAAGGATCACCCAGACAATCTTTCCTTGGCAGGTGATGGATTTGACACGGTGATCAAAGCAAAAGCTGCAGTAGATGCTGTCCCTCAGTGCAGGAACAAAGTCTCGTGTGCTGATATTTTGGCCTTGGCTACCCGTGATGTTATCGTACTGTCCGGTGGACCTTCGTATACCGTTGAGTTGGGAAGGTTTGATGGGTTAGTTTCAAGAGCTTCTGATGTAAATGGAAGGCTTCCGCATCCCACGTTCGATTTGAACCAGCTCAACTCCCTTTTTGCTGCAAATGGACTCACCCAAACTGATATGATTGCTCTCTCAGGTGCACACACCCTTGGATTCTCCCACTGCAGCAAGTTCGCGAATAGAATATATAACTTCAATGGGCAAACTCCAGTGGACCCATCATTGAACAAGCAATACGCAATCCAATTGCAACAGATGTGCCCAAGGAACGTGGACCCAAGGATTGCCATTAACATGGATCCAACCACTCCCCGAAGATTCGATAACGTTTATTACCAAAACCTCCAACAAGGAAAGGGCCTTTTCACCTCGGATCAAATCCTCTTCACTGACCAAAGGTCCAGGAACACTGTTAATTCCTTTGCTTCAAATGCTAACGTTTTCAACTCTAACTTCATTGCTGCTATGACCAAACTGGGTCGTGTTGGAATCAAGACAGCAAGAAATGGCAAAATTCGTACCGATTGTTCTGTGCTTTAA 990 0.4626 MGRLNLILVWSLSLTLSLYNLHPTSAQLSPNHYANVCPNLETIVRQVVTTKFQQTFVTVPATLRLFFHDCFVQGCDASVLVASTGNNQAEKDHPDNLSLAGDGFDTVIKAKAAVDAVPQCRNKVSCADILALATRDVIVLSGGPSYTVELGRFDGLVSRASDVNGRLPHPTFDLNQLNSLFAANGLTQTDMIALSGAHTLGFSHCSKFANRIYNFNGQTPVDPSLNKQYAIQLQQMCPRNVDPRIAINMDPTTPRRFDNVYYQNLQQGKGLFTSDQILFTDQRSRNTVNSFASNANVFNSNFIAAMTKLGRVGIKTARNGKIRTDCSVL 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3425g00002 329 PANTHER - 12 328 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3425g00002 329 FunFam Peroxidase 31 176 - -
Vium3425g00002 329 Gene3D - 31 328 - -
Vium3425g00002 329 CDD secretory_peroxidase 27 328 IPR033905 GO:0004601|GO:0042744
Vium3425g00002 329 ProSitePatterns Peroxidases proximal heme-ligand signature. 190 200 IPR019793 -
Vium3425g00002 329 PRINTS Haem peroxidase superfamily signature 124 141 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3425g00002 329 PRINTS Haem peroxidase superfamily signature 190 205 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3425g00002 329 PRINTS Haem peroxidase superfamily signature 250 265 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3425g00002 329 PRINTS Haem peroxidase superfamily signature 142 154 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3425g00002 329 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3425g00002 329 ProSiteProfiles Plant heme peroxidase family profile. 27 329 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3425g00002 329 PRINTS Plant peroxidase signature 189 201 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3425g00002 329 PRINTS Plant peroxidase signature 248 263 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3425g00002 329 PRINTS Plant peroxidase signature 142 157 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3425g00002 329 PRINTS Plant peroxidase signature 102 115 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3425g00002 329 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3425g00002 329 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3425g00002 329 PRINTS Plant peroxidase signature 123 133 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3425g00002 329 PRINTS Plant peroxidase signature 264 281 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3425g00002 329 PRINTS Plant peroxidase signature 304 317 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3425g00002 329 FunFam Peroxidase 168 309 - -
Vium3425g00002 329 Gene3D Peroxidase, domain 2 168 309 - -
Vium3425g00002 329 Pfam Peroxidase 44 294 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3425g00002 329 ProSitePatterns Peroxidases active site signature. 59 70 IPR019794 GO:0004601
Vium3425g00002 329 SUPERFAMILY Heme-dependent peroxidases 27 328 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3425g00002 Vium-Chr3425 14678 17466 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3425g00002 1 329 Peroxidase AT5G67400 67.781 2.00e-169 472
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3425g00002 K00430 - gmx:100819937 585.489