Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3421g00001 ATGACGCAATTCACACCCTTCCACCAAATCACACCCCTCCCCAACCCTACCATGAACAAAAACCAAATCCCTAGGACTAGGCCCTGGCCTGCAGGCTTTCCTACCTCCAAGGCTTTAACCAACTTCGCCGACGCTAACTGCATGGAACAGTTACTTCTTCACTGTGCCAACGCTATTCAAACCAACGACGTAACCCTCGCACAGCAAATCCTTTGGGTCCTCAACAACATAGCATCCCCCGACGGCGACTCCAATCAACGCCTTGCCTCCAGCTTCCTCCGTGCCCTCACTGCACGTGCAGCCCAAACCGGCACCTGCAAGATGCTCGTCGCCGTAGCCGATCACGCCCGCACCAACATCTCCATAGACACCCACAAGTTCTCCGTCATCGAGCTCGCCAACTTCGTCGACCTAACTCCCTGGCACCGCTTCGGGTTCACCGCTGCCAACGCCGCCATCCTAGAAGCCACTGAGGGTTTCTCCGTCATCCACATCGTCGATCTCAGCCTCACGCATTGCATGCAGATTCCGACGCTCATCGACGCCATCGCTAGCCGCCACGAGGTCCCTCCTCTCATCAAACTCACTGTCGCCGATGCCACCTTCAGAGACATCCCTCCTATGCTCGACCTCTCATACGACGAACTCGGCGCCAAGTTGGTCAATTTCGCAAGGTCCAGGAACGTCGTCATGGAGTTCAGAGTGGTTTCTTCCACTTACCAAGATGGCTTTGCGGATTTGATAGAACAGTTAAGAGTGCAACAACAGCATTTTGTTTATGCAGTAGAACCTCGTCCCTGTGAGGCTTTGGTTATCAACTGTCACATGATGCTTCACTACATCCCCGACGAAACCCTACACGCGATGCCTGAAACTGACTTAACCTCTTTGCTCTACGATTCTTCTTCGGCTGCTGGTTCTTCTTCTGCCATTAGTGTTACTTCCACTTCCTCGCTGCGATCGTTGTTCCTTAAGTCCCTGCGGGGTTTAGATCCAACGGTTGTAATATTGGTGGATGAAGATGCAGATTTGACATCGAATAACTTGGTTTGCAGGCTAAGATCTGCGTTTAACTATCTGTGGATACCATACGACACTGTGGACACGTTCCTTCCACGAGGGAGCAAGCAAAGGCAGTGGTACGAAGCAGACATTTGCTGGAAGATTGAGAACGTGATAGCGCAGGAAGGGGTTCAGAGGGTGGAGAGGGTTGAGCCTAAAAACAGGTGGGAGCAGCGAATGAAGAACGCGAACTTCCAAGGAGTGGCTTTTAGTGAGGACTCTGTTGGGGAGGTGAAGGGCATGCTTGATGAGCATGCTGCGGGATGGGGATTGAAGAGGGAAGATGAACACATTGTCCTCACTTGGAAAGGACACAACGTGGTCTTTGCCTCTGCTTGGTTACCTGTTTGA 1413 0.5223 MTQFTPFHQITPLPNPTMNKNQIPRTRPWPAGFPTSKALTNFADANCMEQLLLHCANAIQTNDVTLAQQILWVLNNIASPDGDSNQRLASSFLRALTARAAQTGTCKMLVAVADHARTNISIDTHKFSVIELANFVDLTPWHRFGFTAANAAILEATEGFSVIHIVDLSLTHCMQIPTLIDAIASRHEVPPLIKLTVADATFRDIPPMLDLSYDELGAKLVNFARSRNVVMEFRVVSSTYQDGFADLIEQLRVQQQHFVYAVEPRPCEALVINCHMMLHYIPDETLHAMPETDLTSLLYDSSSAAGSSSAISVTSTSSLRSLFLKSLRGLDPTVVILVDEDADLTSNNLVCRLRSAFNYLWIPYDTVDTFLPRGSKQRQWYEADICWKIENVIAQEGVQRVERVEPKNRWEQRMKNANFQGVAFSEDSVGEVKGMLDEHAAGWGLKREDEHIVLTWKGHNVVFASAWLPV 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3421g00001 470 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 47 457 IPR005202 -
Vium3421g00001 470 ProSiteProfiles GRAS family profile. 39 468 IPR005202 -
Vium3421g00001 470 Pfam GRAS domain family 48 467 IPR005202 -
Vium3421g00001 470 MobiDBLite consensus disorder prediction 1 27 - -
Vium3421g00001 470 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3421g00001 Vium-Chr3421 475 2536 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3421g00001 30 470 GRAS Transcription Factor Family AT3G49950 57.079 3.21e-177 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium3421g00001 GRAS 1.4e-90 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3421g00001 - - gmx:100814364 763.837