Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3420g00028 ATGATAGTCACTATCGCTTCCTCCAAGAGCATTCCGCTCCCCCCAAACCCTCTTCTAAACCTTTCGATGAAGAATCGATCGAATCCTCCGCGCGAAAACAGGAACACCAAAACATTCCTCAATTCTCTGCAATCACCGACTTCGATTCTCCAATCGGTACTTTTTCATTCTACCATCCACTCTCGCTGTTTACTTCTCACGCTTGTTCTCACCTTCTTATTACTGTTATGGTTAGCCTCGGAAGAGAAACACGAACCGATCAAGGTACATGAAGCAGAAGAAGTTGTAGCTCCGTCTTACGATATTTCTACTACTGGGCAAGACTCGGACAAGAAACACGAGCCAATCATCTTTCAAGAAGAAGAACAAGAAGAAGGTTCGTCCGACGTGGTTATTTCTTCCACTAGGCAAAACACGGATGAGAAATACGAACCGACATTTTTTGAAGAAGAAGCTCCTCCCGACGTGGTTGATTTTGCCCCTAAGGAAGAAAGGACGACGAAGATGAAAGTAAAGGGGCGGCGGCGCCTATGTAAGATTATGCATGAAGACGCTGGAAAAAGCGTGGCGGTTGATGAGTCCAAGTTTGATGAACTGATCGACCTTGATTCACCGATTCCGGTGCCCAAAAACGTCGTCCAGATTGAGGAGAGTGGGGGCAAGAATGAAATCAGGGATATTTTGACTGAACTGAACGCCAAGTTTGAGTTGCTATCGGTTGAGAGGAAGCCGAGGCCGAAGCGTGTTGAGGGTTTGGTTGCAGGTAAAGAAAGTTACGATGATGAGGGTTTAGAGTATGGGAGTGCAGGGTCTTCGTTTTCTCCGCAGCAGGAGAGCTTGGCTGAGGGTAATAAGAATGATGATGGCGACTGTATTGAGTATGATTCAGACGATTCGGTTCAAGTGATGGATAATTTTGTGCCAGAGAATGATGGTTCAATAACTTTGACTGGACCCAGGTCAACCTTTAAGTTGCCTGCTAAAATTGCGAAAATGTTGTATCCACATCAGCGGGAGGGGTTGACGTGGCTCTGGTCTTTGCATAGTCTGGGAAAAGGGGGAATCTTGGGGGATGATATGGGTCTGGGGAAAACAATGCAGATCTGTGGCTTTCTAGCTGGACTGTTTCATTCTCGTTTAATAAGACGGGCATTGGTTGTAGCTCCCAAAACATTATTGCCCCATTGGATCAAAGAATTGTCAGTAGTGGGTCTATCCGAGAAGACAAGAGAATATTTTGGAACTTCTACAAAACTTAGAGAATATGAACTTCAGTACATACTTCAGGACAAAGGAGTTCTTCTCACAACTTATGATATTGTCCGCAACAATTCTAAGTCCTTACGGGGGAGTAATTATTTAAATGATGACGAAAGTGAAGATGATGCTACATGGGACTACATGATACTCGATGAGGGACACCTTATAAAGAACCCAAGCACACAAAGGGCTAAAAGTTTGCTTGAAATACCAAGTGCTCATCGCATTATCATCAGTGGCACACCATTGCAAAATAATCTTAAGGAATTGTGGGCATTGTTCAATTTCTGTTGCCCAGAGTTGCTAGGTGACAACAAATGGTTCAAAGAAAAATTTGAAAAGCCCATACTCCGTGGAAATGACAAGCATGCTTCTGACAGGGAAAAACGTGTTGGTTCATCTGTAGCACAGGAACTAAGAGATCGGATTCAGCCTTACTTCTTAAGACGAATGAAGAGTGAGGTTTTCAGTCAAGATAATGAGAAAACAATTGCAAAACTTTCTCAAAAACAAGAGATCATTGTGTGGCTTCGATTGACCAGTGTTCAGCGGTATCTTTATGAAGCATTTTTGAAGAGTGAGATTGTTCTCTCAGCATTTGATGGCTCACCACTGGCTGCTCTTACGATTCTAAAGAAAATATGTGATCATCCACTTCTGTTGACCAAGCGGGCAGCTGAGGATGTGTTGGAAGGGATGGACTCAATGCTAAAGCCAGACGAAGCTAATGTTGCAACAAAATTGGCAATGCACATAGCCGATGTTGGTGACACAGAAAGGTTTAAAGATGAACAAGACGTGTCATGCAAAATTTCCTTCATTATGTCATTGCTGGATAATTTGATCCCAGAAGGGCATTGTGTGCTTATATTTTCTCAGACTCGCATGATGCTTAATCTTATTCAGGAATGCCTACTGTCCCAAGGTTATGACTTCTTACGAATTGATGGCACAACAAAAGTCAATGACAGACTAAAGATTGTCAATGATTTCCAAGAAGGTGTTGGAGCTCCTATATTTCTCTTGACGTCTCAGGTTGGTGGTTTGGGACTTACACTTACAAGAGCAGATCGTGTGATTGTTGTTGATCCTGCTTGGAACCCAAGTATGGATAATCAAAGTGTGGACCGTGCATATCGAATTGGGCAAAAGAAAGATGTCATTGTATATAGACTAATGACGTGCGGAACTGTTGAAGAAAAGATCTACAGGAAACAGGTATATAAGGGAGGATTATTCAAAACTGCTACCGAGAAGAAAGAACAGATTCGGTACTTTAGCCAACAGGATCTTAGGGAGCTTTTCAGCCTTCCAAAAGAAGGATTTGATGTATCTGTTACCCAAAGGCAATTGAATGAGGAGCACGATCGTCAATATACAGTTGATGACTCTTTCAAAGCACATATAGAGTTCTTGAAGAGTAAAGGCATAGCTGGAGTTAGTCACCACAGTTTACTCTTTTCAAAGGCAGGACCGCAGGTTCGTGATGAACTTGAGGATGATGAAGTTCCAAGGAATCATGCGACTAGGTATATTGGGACTTCGAGGTCATCTTCAAATGACCATATTACTTATGGCTCCGAGTTTGCAATTAATCCTAAGAATGTTACCACAAGCAAAAAAGGTTCATCTCCTAGCAGTGCTGGTAAATTGACGGAGTCAGAAATCAAGGATAAAATTAATCGGCTCTCTCAAACACTCTCAAATGCGGCTATGATTTCTAAGTTACCTGACAAGGGCGAGAAACTGCAGAAGCGGCTTGCGGAGCTGAGTTTAGAGCTGGCTGAACTGAAAAGTGAAAGAAATGTGATTGATTTGGATGATTTTACCACTGAATTTGAACAAGGGTTGAATGTATAG 3120 0.4253 MIVTIASSKSIPLPPNPLLNLSMKNRSNPPRENRNTKTFLNSLQSPTSILQSVLFHSTIHSRCLLLTLVLTFLLLLWLASEEKHEPIKVHEAEEVVAPSYDISTTGQDSDKKHEPIIFQEEEQEEGSSDVVISSTRQNTDEKYEPTFFEEEAPPDVVDFAPKEERTTKMKVKGRRRLCKIMHEDAGKSVAVDESKFDELIDLDSPIPVPKNVVQIEESGGKNEIRDILTELNAKFELLSVERKPRPKRVEGLVAGKESYDDEGLEYGSAGSSFSPQQESLAEGNKNDDGDCIEYDSDDSVQVMDNFVPENDGSITLTGPRSTFKLPAKIAKMLYPHQREGLTWLWSLHSLGKGGILGDDMGLGKTMQICGFLAGLFHSRLIRRALVVAPKTLLPHWIKELSVVGLSEKTREYFGTSTKLREYELQYILQDKGVLLTTYDIVRNNSKSLRGSNYLNDDESEDDATWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDNKWFKEKFEKPILRGNDKHASDREKRVGSSVAQELRDRIQPYFLRRMKSEVFSQDNEKTIAKLSQKQEIIVWLRLTSVQRYLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLKPDEANVATKLAMHIADVGDTERFKDEQDVSCKISFIMSLLDNLIPEGHCVLIFSQTRMMLNLIQECLLSQGYDFLRIDGTTKVNDRLKIVNDFQEGVGAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSMDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGLFKTATEKKEQIRYFSQQDLRELFSLPKEGFDVSVTQRQLNEEHDRQYTVDDSFKAHIEFLKSKGIAGVSHHSLLFSKAGPQVRDELEDDEVPRNHATRYIGTSRSSSNDHITYGSEFAINPKNVTTSKKGSSPSSAGKLTESEIKDKINRLSQTLSNAAMISKLPDKGEKLQKRLAELSLELAELKSERNVIDLDDFTTEFEQGLNV 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3420g00028 1039 MobiDBLite consensus disorder prediction 954 975 - -
Vium3420g00028 1039 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 322 570 IPR027417 -
Vium3420g00028 1039 Gene3D - 592 888 IPR027417 -
Vium3420g00028 1039 Pfam SNF2-related domain 350 640 IPR000330 GO:0005524|GO:0140658
Vium3420g00028 1039 CDD SF2_C_SNF 682 813 - -
Vium3420g00028 1039 MobiDBLite consensus disorder prediction 264 287 - -
Vium3420g00028 1039 MobiDBLite consensus disorder prediction 119 139 - -
Vium3420g00028 1039 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 584 866 IPR027417 -
Vium3420g00028 1039 SMART ultradead3 328 531 IPR014001 -
Vium3420g00028 1039 MobiDBLite consensus disorder prediction 954 971 - -
Vium3420g00028 1039 Gene3D - 317 591 IPR038718 -
Vium3420g00028 1039 PANTHER SNF2/RAD54 FAMILY MEMBER 163 1018 - -
Vium3420g00028 1039 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 693 852 IPR001650 -
Vium3420g00028 1039 Pfam Helicase conserved C-terminal domain 690 802 IPR001650 -
Vium3420g00028 1039 SMART helicmild6 719 802 IPR001650 -
Vium3420g00028 1039 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 345 520 IPR014001 -
Vium3420g00028 1039 Coils Coil 1000 1027 - -
Vium3420g00028 1039 FunFam Protein CHROMATIN REMODELING 24 312 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3420g00028 Vium-Chr3420 190893 199790 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3420g00028 688 856 RAD5 or RAD16-like Gene Family AT5G22750 34.320 1.38e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium3420g00028 SNF2_N 7.9e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3420g00028 K20093 - gmx:100779283 1561.2