Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3420g00027 ATGGCGAACAACAAGAGCTCCAAGAAACCAGTCAGTCTCAATGATAGTCACTATCGCTTCCTCCAAGAGCATTCCGCTCCCCCCAAACCCTCTTCTAAACCTTTCGATGAAGAATCGATCGAATCCTCCGCGCGAAAACAGGAACACCAAAACATTCCTCAATTCTCTGCAATCACCGACTTCGATTCTCCAATCGCCTCGGAAGAGAAACACGAACCGATCAAGGTACATGAAGCAGAAGAAGTTGTAGCTCCGTCTTACGATATTTCTACTACTGGGCAAGACTCGGACAAGAAACACGAGCCAATCATCTTTCAAGAAGAAGAACAAGAAGAAGGTTCGTCCGACGTGGTTATTTCTTCCACTAGGCAAAACACGGATGAGAAATACGAACCGACATTTTTTGAAGAAGAAGCTCCTCCCGACGTGGTTGATTTTGCCCCTAAGGAAGAAAGGACGACGAAGATGAAAGTAAAGGGGCGGCGGCGCCTATGTAAGATTATGCATGAAGACGCTGGAAAAAGCGTGGCGGTTGATGAGTCCAAGTTTGATGAACTGATCGACCTTGATTCACCGATTCCGGTGCCCAAAAACGTCGTCCAGATTGAGGAGAGTGGGGGCAAGAATGAAATCAGGGATATTTTGACTGAACTGAACGCCAAGTTTGAGTTGCTATCGGTTGAGAGGAAGCCGAGGCCGAAGCGTGTTGAGGGTTTGGTTGCAGGTAAAGAAAGTTACGATGATGAGGGTTTAGAGTATGGGAGTGCAGGGTCTTCGTTTTCTCCGCAGCAGGAGAGCTTGGCTGAGGGTAATAAGAATGATGATGGCGACTGTATTGAGTATGATTCAGACGATTCGGTTCAAGTGATGGATAATTTTGTGCCAGAGAATGATGGTTCAATAACTTTGACTGGACCCAGGTCAACCTTTAAGTTGCCTGCTAAAATTGCGAAAATGTTGTATCCACATCAGCGGGAGGGGTTGACGTGGCTCTGGTCTTTGCATAGTCTGGGAAAAGGGGGAATCTTGGGGGATGATATGGGTCTGGGGAAAACAATGCAGATCTGTGGCTTTCTAGCTGGACTGTTTCATTCTCGTTTAATAAGACGGGCATTGGTTGTAGCTCCCAAAACATTATTGCCCCATTGGATCAAAGAATTGTCAGTAGTGGGTCTATCCGAGAAGACAAGAGAATATTTTGGAACTTCTACAAAACTTAGAGAATATGAACTTCAGTACATACTTCAGGACAAAGGAGTTCTTCTCACAACTTATGATATTGTCCGCAACAATTCTAAGTCCTTACGGGGGAGTAATTATTTAAATGATGACGAAAGTGAAGATGATGCTACATGGGACTACATGATACTCGATGAGGGACACCTTATAAAGAACCCAAGCACACAAAGGGCTAAAAGTTTGCTTGAAATACCAAGTGCTCATCGCATTATCATCAGTGGCACACCATTGCAAAATAATCTTAAGGAATTGTGGGCATTGTTCAATTTCTGTTGCCCAGAGTTGCTAGGTGACAACAAATGGTTCAAAGAAAAATTTGAAAAGCCCATACTCCGTGGAAATGACAAGCATGCTTCTGACAGGGAAAAACGTGTTGGTTCATCTGTAGCACAGGAACTAAGAGATCGGATTCAGCCTTACTTCTTAAGACGAATGAAGAGTGAGGTTTTCAGTCAAGATAATGAGAAAACAATTGCAAAACTTTCTCAAAAACAAGAGATCATTGTGTGGCTTCGATTGACCAGTGTTCAGCGGTATCTTTATGAAGCATTTTTGAAGAGTGAGATTGTTCTCTCAGCATTTGATGGCTCACCACTGGCTGCTCTTACGATTCTAAAGAAAATATGTGATCATCCACTTCTGTTGACCAAGCGGGCAGCTGAGGATGTGTTGGAAGGGATGGACTCAATGCTAAAGCCAGACGAAGCTAATGTTGCAACAAAATTGGCAATGCACATAGCCGATGTTGGTGACACAGAAAGGTTTAAAGATGAACAAGACGTGTCATGCAAAATTTCCTTCATTATGTCATTGCTGGATAATTTGATCCCAGAAGGGCATTGTGTGCTTATATTTTCTCAGACTCGCATGATGCTTAATCTTATTCAGGAATGCCTACTGTCCCAAGGTTATGACTTCTTACGAATTGATGGCACAACAAAAGTCAATGACAGACTAAAGATTGTCAATGATTTCCAAGAAGGTGTTGGAGCTCCTATATTTCTCTTGACGTCTCAGGTTGGTGGTTTGGGACTTACACTTACAAGAGCAGATCGTGTGATTGTTGTTGATCCTGCTTGGAACCCAAGTATGGATAATCAAAGTGTGGACCGTGCATATCGAATTGGGCAAAAGAAAGATGTCATTGTATATAGACTAATGACGTGCGGAACTGTTGAAGAAAAGATCTACAGGAAACAGGTATATAAGGGAGGATTATTCAAAACTGCTACCGAGAAGAAAGAACAGATTCGGTACTTTAGCCAACAGGATCTTAGGGAGCTTTTCAGCCTTCCAAAAGAAGGATTTGATGTATCTGTTACCCAAAGGCAATTGAATGAGGAGCACGATCGTCAATATACAGTTGATGACTCTTTCAAAGCACATATAGAGTTCTTGAAGAGTAAAGGCATAGCTGGAGTTAGTCACCACAGTTTACTCTTTTCAAAGGCAGGACCGCAGGTTCGTGATGAACTTGAGGATGATGAAGTTCCAAGGAATCATGCGACTAGGTATATTGGGACTTCGAGGTCATCTTCAAATGACCATATTACTTATGGCTCCGAGTTTGCAATTAATCCTAAGAATGTTACCACAAGCAAAAAAGGTTCATCTCCTAGCAGTGCTGGTAAATTGACGGAGTCAGAAATCAAGGATAAAATTAATCGGCTCTCTCAAACACTCTCAAATGCGGCTATGATTTCTAAGTTACCTGACAAGGGCGAGAAACTGCAGAAGCGGCTTGCGGAGCTGAGTTTAGAGCTGGCTGAACTGAAAAGTGAAAGAAATGTGATTGATTTGGATGATTTTACCACTGAATTTGAACAAGGGTTGAATGTATAG 3081 0.4268 MANNKSSKKPVSLNDSHYRFLQEHSAPPKPSSKPFDEESIESSARKQEHQNIPQFSAITDFDSPIASEEKHEPIKVHEAEEVVAPSYDISTTGQDSDKKHEPIIFQEEEQEEGSSDVVISSTRQNTDEKYEPTFFEEEAPPDVVDFAPKEERTTKMKVKGRRRLCKIMHEDAGKSVAVDESKFDELIDLDSPIPVPKNVVQIEESGGKNEIRDILTELNAKFELLSVERKPRPKRVEGLVAGKESYDDEGLEYGSAGSSFSPQQESLAEGNKNDDGDCIEYDSDDSVQVMDNFVPENDGSITLTGPRSTFKLPAKIAKMLYPHQREGLTWLWSLHSLGKGGILGDDMGLGKTMQICGFLAGLFHSRLIRRALVVAPKTLLPHWIKELSVVGLSEKTREYFGTSTKLREYELQYILQDKGVLLTTYDIVRNNSKSLRGSNYLNDDESEDDATWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDNKWFKEKFEKPILRGNDKHASDREKRVGSSVAQELRDRIQPYFLRRMKSEVFSQDNEKTIAKLSQKQEIIVWLRLTSVQRYLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLKPDEANVATKLAMHIADVGDTERFKDEQDVSCKISFIMSLLDNLIPEGHCVLIFSQTRMMLNLIQECLLSQGYDFLRIDGTTKVNDRLKIVNDFQEGVGAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSMDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGLFKTATEKKEQIRYFSQQDLRELFSLPKEGFDVSVTQRQLNEEHDRQYTVDDSFKAHIEFLKSKGIAGVSHHSLLFSKAGPQVRDELEDDEVPRNHATRYIGTSRSSSNDHITYGSEFAINPKNVTTSKKGSSPSSAGKLTESEIKDKINRLSQTLSNAAMISKLPDKGEKLQKRLAELSLELAELKSERNVIDLDDFTTEFEQGLNV 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3420g00027 1026 PANTHER SNF2/RAD54 FAMILY MEMBER 86 1005 - -
Vium3420g00027 1026 MobiDBLite consensus disorder prediction 64 82 - -
Vium3420g00027 1026 CDD SF2_C_SNF 669 800 - -
Vium3420g00027 1026 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 571 853 IPR027417 -
Vium3420g00027 1026 Pfam Helicase conserved C-terminal domain 677 789 IPR001650 -
Vium3420g00027 1026 Pfam SNF2-related domain 337 627 IPR000330 GO:0005524|GO:0140658
Vium3420g00027 1026 MobiDBLite consensus disorder prediction 93 107 - -
Vium3420g00027 1026 SMART helicmild6 706 789 IPR001650 -
Vium3420g00027 1026 MobiDBLite consensus disorder prediction 941 962 - -
Vium3420g00027 1026 MobiDBLite consensus disorder prediction 1 140 - -
Vium3420g00027 1026 MobiDBLite consensus disorder prediction 251 274 - -
Vium3420g00027 1026 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 332 507 IPR014001 -
Vium3420g00027 1026 Coils Coil 987 1014 - -
Vium3420g00027 1026 Gene3D - 304 578 IPR038718 -
Vium3420g00027 1026 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 680 839 IPR001650 -
Vium3420g00027 1026 MobiDBLite consensus disorder prediction 941 958 - -
Vium3420g00027 1026 FunFam Protein CHROMATIN REMODELING 24 299 577 - -
Vium3420g00027 1026 MobiDBLite consensus disorder prediction 30 45 - -
Vium3420g00027 1026 MobiDBLite consensus disorder prediction 46 61 - -
Vium3420g00027 1026 Gene3D - 579 875 IPR027417 -
Vium3420g00027 1026 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 309 557 IPR027417 -
Vium3420g00027 1026 SMART ultradead3 315 518 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3420g00027 Vium-Chr3420 190893 199791 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3420g00027 675 843 RAD5 or RAD16-like Gene Family AT5G22750 34.320 1.37e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium3420g00027 SNF2_N 7.8e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3420g00027 K20093 - gmx:100779283 1655.19