Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3420g00026 ATGGCGAACAACAAGAGCTCCAAGAAACCAGTCAGTCTCAATGATAGTCACTATCGCTTCCTCCAAGAGCATTCCGCTCCCCCCAAACCCTCTTCTAAACCTTTCGGTAACGTTTCACTTTTTTCTCTTTTCTTCTTTCTTTTTTCTATTTCAATTTCTTTCTCATCAACCTACCTCTTTTTTTTCGCAGATGAAGAATCGATCGAATCCTCCGCGCGAAAACAGGAACACCAAAACATTCCTCAATTCTCTGCAATCACCGACTTCGATTCTCCAATCGCCTCGGAAGAGAAACACGAACCGATCAAGGTACATGAAGCAGAAGAAGTTGTAGCTCCGTCTTACGATATTTCTACTACTGGGCAAGACTCGGACAAGAAACACGAGCCAATCATCTTTCAAGAAGAAGAACAAGAAGAAGGTTCGTCCGACGTGGTTATTTCTTCCACTAGGCAAAACACGGATGAGAAATACGAACCGACATTTTTTGAAGAAGAAGCTCCTCCCGACGTGGTTGATTTTGCCCCTAAGGAAGAAAGGACGACGAAGATGAAAGTAAAGGGGCGGCGGCGCCTATGTAAGATTATGCATGAAGACGCTGGAAAAAGCGTGGCGGTTGATGAGTCCAAGTTTGATGAACTGATCGACCTTGATTCACCGATTCCGGTGCCCAAAAACGTCGTCCAGATTGAGGAGAGTGGGGGCAAGAATGAAATCAGGGATATTTTGACTGAACTGAACGCCAAGTTTGAGTTGCTATCGGTTGAGAGGAAGCCGAGGCCGAAGCGTGTTGAGGGTTTGGTTGCAGGTAAAGAAAGTTACGATGATGAGGGTTTAGAGTATGGGAGTGCAGGGTCTTCGTTTTCTCCGCAGCAGGAGAGCTTGGCTGAGGGTAATAAGAATGATGATGGCGACTGTATTGAGTATGATTCAGACGATTCGGTTCAAGTGATGGATAATTTTGTGCCAGAGAATGATGGTTCAATAACTTTGACTGGACCCAGGTCAACCTTTAAGTTGCCTGCTAAAATTGCGAAAATGTTGTATCCACATCAGCGGGAGGGGTTGACGTGGCTCTGGTCTTTGCATAGTCTGGGAAAAGGGGGAATCTTGGGGGATGATATGGGTCTGGGGAAAACAATGCAGATCTGTGGCTTTCTAGCTGGACTGTTTCATTCTCGTTTAATAAGACGGGCATTGGTTGTAGCTCCCAAAACATTATTGCCCCATTGGATCAAAGAATTGTCAGTAGTGGGTCTATCCGAGAAGACAAGAGAATATTTTGGAACTTCTACAAAACTTAGAGAATATGAACTTCAGTACATACTTCAGGACAAAGGAGTTCTTCTCACAACTTATGATATTGTCCGCAACAATTCTAAGTCCTTACGGGGGAGTAATTATTTAAATGATGACGAAAGTGAAGATGATGCTACATGGGACTACATGATACTCGATGAGGGACACCTTATAAAGAACCCAAGCACACAAAGGGCTAAAAGTTTGCTTGAAATACCAAGTGCTCATCGCATTATCATCAGTGGCACACCATTGCAAAATAATCTTAAGGAATTGTGGGCATTGTTCAATTTCTGTTGCCCAGAGTTGCTAGGTGACAACAAATGGTTCAAAGAAAAATTTGAAAAGCCCATACTCCGTGGAAATGACAAGCATGCTTCTGACAGGGAAAAACGTGTTGGTTCATCTGTAGCACAGGAACTAAGAGATCGGATTCAGCCTTACTTCTTAAGACGAATGAAGAGTGAGGTTTTCAGTCAAGATAATGAGAAAACAATTGCAAAACTTTCTCAAAAACAAGAGATCATTGTGTGGCTTCGATTGACCAGTGTTCAGCGGTATCTTTATGAAGCATTTTTGAAGAGTGAGATTGTTCTCTCAGCATTTGATGGCTCACCACTGGCTGCTCTTACGATTCTAAAGAAAATATGTGATCATCCACTTCTGTTGACCAAGCGGGCAGCTGAGGATGTGTTGGAAGGGATGGACTCAATGCTAAAGCCAGACGAAGCTAATGTTGCAACAAAATTGGCAATGCACATAGCCGATGTTGGTGACACAGAAAGGTTTAAAGATGAACAAGACGTGTCATGCAAAATTTCCTTCATTATGTCATTGCTGGATAATTTGATCCCAGAAGGGCATTGTGTGCTTATATTTTCTCAGACTCGCATGATGCTTAATCTTATTCAGGAATGCCTACTGTCCCAAGGTTATGACTTCTTACGAATTGATGGCACAACAAAAGTCAATGACAGACTAAAGATTGTCAATGATTTCCAAGAAGGTGTTGGAGCTCCTATATTTCTCTTGACGTCTCAGGTTGGTGGTTTGGGACTTACACTTACAAGAGCAGATCGTGTGATTGTTGTTGATCCTGCTTGGAACCCAAGTATGGATAATCAAAGTGTGGACCGTGCATATCGAATTGGGCAAAAGAAAGATGTCATTGTATATAGACTAATGACGTGCGGAACTGTTGAAGAAAAGATCTACAGGAAACAGGTATATAAGGGAGGATTATTCAAAACTGCTACCGAGAAGAAAGAACAGATTCGGTACTTTAGCCAACAGGATCTTAGGGAGCTTTTCAGCCTTCCAAAAGAAGGATTTGATGTATCTGTTACCCAAAGGCAATTGAATGAGGAGCACGATCGTCAATATACAGTTGATGACTCTTTCAAAGCACATATAGAGTTCTTGAAGAGTAAAGGCATAGCTGGAGTTAGTCACCACAGTTTACTCTTTTCAAAGGCAGGACCGCAGGTTCGTGATGAACTTGAGGATGATGAAGTTCCAAGGAATCATGCGACTAGGTATATTGGGACTTCGAGGTCATCTTCAAATGACCATATTACTTATGGCTCCGAGTTTGCAATTAATCCTAAGAATGTTACCACAAGCAAAAAAGGTTCATCTCCTAGCAGTGCTGGTAAATTGACGGAGTCAGAAATCAAGGATAAAATTAATCGGCTCTCTCAAACACTCTCAAATGCGGCTATGATTTCTAAGTTACCTGACAAGGGCGAGAAACTGCAGAAGCGGCTTGCGGAGCTGAGTTTAGAGCTGGCTGAACTGAAAAGTGAAAGAAATGTGATTGATTTGGATGATTTTACCACTGAATTTGAACAAGGGTTGAATGTATAG 3165 0.4234 MANNKSSKKPVSLNDSHYRFLQEHSAPPKPSSKPFGNVSLFSLFFFLFSISISFSSTYLFFFADEESIESSARKQEHQNIPQFSAITDFDSPIASEEKHEPIKVHEAEEVVAPSYDISTTGQDSDKKHEPIIFQEEEQEEGSSDVVISSTRQNTDEKYEPTFFEEEAPPDVVDFAPKEERTTKMKVKGRRRLCKIMHEDAGKSVAVDESKFDELIDLDSPIPVPKNVVQIEESGGKNEIRDILTELNAKFELLSVERKPRPKRVEGLVAGKESYDDEGLEYGSAGSSFSPQQESLAEGNKNDDGDCIEYDSDDSVQVMDNFVPENDGSITLTGPRSTFKLPAKIAKMLYPHQREGLTWLWSLHSLGKGGILGDDMGLGKTMQICGFLAGLFHSRLIRRALVVAPKTLLPHWIKELSVVGLSEKTREYFGTSTKLREYELQYILQDKGVLLTTYDIVRNNSKSLRGSNYLNDDESEDDATWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDNKWFKEKFEKPILRGNDKHASDREKRVGSSVAQELRDRIQPYFLRRMKSEVFSQDNEKTIAKLSQKQEIIVWLRLTSVQRYLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLKPDEANVATKLAMHIADVGDTERFKDEQDVSCKISFIMSLLDNLIPEGHCVLIFSQTRMMLNLIQECLLSQGYDFLRIDGTTKVNDRLKIVNDFQEGVGAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSMDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGLFKTATEKKEQIRYFSQQDLRELFSLPKEGFDVSVTQRQLNEEHDRQYTVDDSFKAHIEFLKSKGIAGVSHHSLLFSKAGPQVRDELEDDEVPRNHATRYIGTSRSSSNDHITYGSEFAINPKNVTTSKKGSSPSSAGKLTESEIKDKINRLSQTLSNAAMISKLPDKGEKLQKRLAELSLELAELKSERNVIDLDDFTTEFEQGLNV 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3420g00026 1054 CDD SF2_C_SNF 697 828 - -
Vium3420g00026 1054 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 337 585 IPR027417 -
Vium3420g00026 1054 SMART ultradead3 343 546 IPR014001 -
Vium3420g00026 1054 Gene3D - 607 903 IPR027417 -
Vium3420g00026 1054 MobiDBLite consensus disorder prediction 969 990 - -
Vium3420g00026 1054 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 599 881 IPR027417 -
Vium3420g00026 1054 Gene3D - 332 606 IPR038718 -
Vium3420g00026 1054 SMART helicmild6 734 817 IPR001650 -
Vium3420g00026 1054 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 360 535 IPR014001 -
Vium3420g00026 1054 MobiDBLite consensus disorder prediction 279 302 - -
Vium3420g00026 1054 Coils Coil 1015 1042 - -
Vium3420g00026 1054 MobiDBLite consensus disorder prediction 969 986 - -
Vium3420g00026 1054 FunFam Protein CHROMATIN REMODELING 24 327 605 - -
Vium3420g00026 1054 Pfam Helicase conserved C-terminal domain 705 817 IPR001650 -
Vium3420g00026 1054 Pfam SNF2-related domain 365 655 IPR000330 GO:0005524|GO:0140658
Vium3420g00026 1054 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 708 867 IPR001650 -
Vium3420g00026 1054 PANTHER SNF2/RAD54 FAMILY MEMBER 118 1033 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3420g00026 Vium-Chr3420 190893 199792 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3420g00026 703 871 RAD5 or RAD16-like Gene Family AT5G22750 34.320 1.40e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium3420g00026 SNF2_N 8.2e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3420g00026 K20093 - gmx:100779283 1641.32