Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3420g00025 ATGGCGAACAACAAGAGCTCCAAGAAACCAGTCAGTCTCAATGATAGTCACTATCGCTTCCTCCAAGAGCATTCCGCTCCCCCCAAACCCTCTTCTAAACCTTTCGGTAACGTTTCACTTTTTTCTCTTTTCTTCTTTCTTTTTTCTATTTCAATTTCTTTCTCATCAACCTACCTCTTTTTTTTCGCAGATGAAGAATCGATCGAATCCTCCGCGCGAAAACAGGAACACCAAAACATTCCTCAATTCTCTGCAATCACCGACTTCGATTCTCCAATCGCCTCGGAAGAGAAACACGAACCGATCAAGGTACATGAAGCAGAAGAAGTTGTAGCTCCGTCTTACGATATTTCTACTACTGGGCAAGACTCGGACAAGAAACACGAGCCAATCATCTTTCAAGAAGAAGAACAAGAAGAAGGTTCGTCCGACGTGGTTATTTCTTCCACTAGGCAAAACACGGATGAGAAATACGAACCGACATTTTTTGAAGAAGAAGCTCCTCCCGACGTGGTTGATTTTGCCCCTAAGGAAGAAAGGACGACGAAGATGAAAGTAAAGGGGCGGCGGCGCCTATGTAAGATTATGCATGAAGACGCTGGAAAAAGCGTGGCGGTTGATGAGTCCAAGTTTGATGAACTGATCGACCTTGATTCACCGATTCCGGTGCCCAAAAACGTCGTCCAGATTGAGGAGAGTGGGGGCAAGAATGAAATCAGGGATATTTTGACTGAACTGAACGCCAAGTTTGAGTTGCTATCGGTTGAGAGGAAGCCGAGGCCGAAGCGTGTTGAGGGTTTGGTTGCAGGTAAAGAAAGTTACGATGATGAGGGTTTAGAGTATGGGAGTGCAGGGTCTTCGTTTTCTCCGCAGCAGGAGAGCTTGGCTGAGGGTAATAAGAATGATGATGGCGACTGTATTGAGTATGATTCAGACGATTCGGTTCAAGTGATGGATAATTTTGTGCCAGAGAATGATGGTTCAATAACTTTGACTGGACCCAGGTCAACCTTTAAGTTGCCTGCTAAAATTGCGAAAATGTTGTATCCACATCAGCGGGAGGGGTTGACGTGGCTCTGGTCTTTGCATAGTCTGGGAAAAGGGGGAATCTTGGGGGATGATATGGGTCTGGGGAAAACAATGCAGATCTGTGGCTTTCTAGCTGGACTGTTTCATTCTCGTTTAATAAGACGGGCATTGGTTGTAGCTCCCAAAACATTATTGCCCCATTGGATCAAAGAATTGTCAGTAGTGGGTCTATCCGAGAAGACAAGAGAATATTTTGGAACTTCTACAAAACTTAGAGAATATGAACTTCAGTACATACTTCAGGACAAAGGAGTTCTTCTCACAACTTATGATATTGTCCGCAACAATTCTAAGTCCTTACGTGAAGATGATGCTACATGGGACTACATGATACTCGATGAGGGACACCTTATAAAGAACCCAAGCACACAAAGGGCTAAAAGTTTGCTTGAAATACCAAGTGCTCATCGCATTATCATCAGTGGCACACCATTGCAAAATAATCTTAAGGAATTGTGGGCATTGTTCAATTTCTGTTGCCCAGAGTTGCTAGGTGACAACAAATGGTTCAAAGAAAAATTTGAAAAGCCCATACTCCGTGGAAATGACAAGCATGCTTCTGACAGGGAAAAACGTGTTGGTTCATCTGTAGCACAGGAACTAAGAGATCGGATTCAGCCTTACTTCTTAAGACGAATGAAGAGTGAGGTTTTCAGTCAAGATAATGAGAAAACAATTGCAAAACTTTCTCAAAAACAAGAGATCATTGTGTGGCTTCGATTGACCAGTGTTCAGCGGTATCTTTATGAAGCATTTTTGAAGAGTGAGATTGTTCTCTCAGCATTTGATGGCTCACCACTGGCTGCTCTTACGATTCTAAAGAAAATATGTGATCATCCACTTCTGTTGACCAAGCGGGCAGCTGAGGATGTGTTGGAAGGGATGGACTCAATGCTAAAGCCAGACGAAGCTAATGTTGCAACAAAATTGGCAATGCACATAGCCGATGTTGGTGACACAGAAAGGTTTAAAGATGAACAAGACGTGTCATGCAAAATTTCCTTCATTATGTCATTGCTGGATAATTTGATCCCAGAAGGGCATTGTGTGCTTATATTTTCTCAGACTCGCATGATGCTTAATCTTATTCAGGAATGCCTACTGTCCCAAGGTTATGACTTCTTACGAATTGATGGCACAACAAAAGTCAATGACAGACTAAAGATTGTCAATGATTTCCAAGAAGGTGTTGGAGCTCCTATATTTCTCTTGACGTCTCAGGTTGGTGGTTTGGGACTTACACTTACAAGAGCAGATCGTGTGATTGTTGTTGATCCTGCTTGGAACCCAAGTATGGATAATCAAAGTGTGGACCGTGCATATCGAATTGGGCAAAAGAAAGATGTCATTGTATATAGACTAATGACGTGCGGAACTGTTGAAGAAAAGATCTACAGGAAACAGGTATATAAGGGAGGATTATTCAAAACTGCTACCGAGAAGAAAGAACAGATTCGGTACTTTAGCCAACAGGATCTTAGGGAGCTTTTCAGCCTTCCAAAAGAAGGATTTGATGTATCTGTTACCCAAAGGCAATTGAATGAGGAGCACGATCGTCAATATACAGTTGATGACTCTTTCAAAGCACATATAGAGTTCTTGAAGAGTAAAGGCATAGCTGGAGTTAGTCACCACAGTTTACTCTTTTCAAAGGCAGGACCGCAGGTTCGTGATGAACTTGAGGATGATGAAGTTCCAAGGAATCATGCGACTAGGTATATTGGGACTTCGAGGTCATCTTCAAATGACCATATTACTTATGGCTCCGAGTTTGCAATTAATCCTAAGAATGTTACCACAAGCAAAAAAGGTTCATCTCCTAGCAGTGCTGGTAAATTGACGGAGTCAGAAATCAAGGATAAAATTAATCGGCTCTCTCAAACACTCTCAAATGCGGCTATGATTTCTAAGTTACCTGACAAGGGCGAGAAACTGCAGAAGCGGCTTGCGGAGCTGAGTTTAGAGCTGGCTGAACTGAAAAGTGAAAGAAATGTGATTGATTTGGATGATTTTACCACTGAATTTGAACAAGGGTTGAATGTATAG 3135 0.4242 MANNKSSKKPVSLNDSHYRFLQEHSAPPKPSSKPFGNVSLFSLFFFLFSISISFSSTYLFFFADEESIESSARKQEHQNIPQFSAITDFDSPIASEEKHEPIKVHEAEEVVAPSYDISTTGQDSDKKHEPIIFQEEEQEEGSSDVVISSTRQNTDEKYEPTFFEEEAPPDVVDFAPKEERTTKMKVKGRRRLCKIMHEDAGKSVAVDESKFDELIDLDSPIPVPKNVVQIEESGGKNEIRDILTELNAKFELLSVERKPRPKRVEGLVAGKESYDDEGLEYGSAGSSFSPQQESLAEGNKNDDGDCIEYDSDDSVQVMDNFVPENDGSITLTGPRSTFKLPAKIAKMLYPHQREGLTWLWSLHSLGKGGILGDDMGLGKTMQICGFLAGLFHSRLIRRALVVAPKTLLPHWIKELSVVGLSEKTREYFGTSTKLREYELQYILQDKGVLLTTYDIVRNNSKSLREDDATWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDNKWFKEKFEKPILRGNDKHASDREKRVGSSVAQELRDRIQPYFLRRMKSEVFSQDNEKTIAKLSQKQEIIVWLRLTSVQRYLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLKPDEANVATKLAMHIADVGDTERFKDEQDVSCKISFIMSLLDNLIPEGHCVLIFSQTRMMLNLIQECLLSQGYDFLRIDGTTKVNDRLKIVNDFQEGVGAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSMDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGLFKTATEKKEQIRYFSQQDLRELFSLPKEGFDVSVTQRQLNEEHDRQYTVDDSFKAHIEFLKSKGIAGVSHHSLLFSKAGPQVRDELEDDEVPRNHATRYIGTSRSSSNDHITYGSEFAINPKNVTTSKKGSSPSSAGKLTESEIKDKINRLSQTLSNAAMISKLPDKGEKLQKRLAELSLELAELKSERNVIDLDDFTTEFEQGLNV 1044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3420g00025 1044 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 337 575 IPR027417 -
Vium3420g00025 1044 Coils Coil 1005 1032 - -
Vium3420g00025 1044 MobiDBLite consensus disorder prediction 959 976 - -
Vium3420g00025 1044 Gene3D - 332 596 IPR038718 -
Vium3420g00025 1044 Pfam SNF2-related domain 365 645 IPR000330 GO:0005524|GO:0140658
Vium3420g00025 1044 CDD SF2_C_SNF 687 818 - -
Vium3420g00025 1044 MobiDBLite consensus disorder prediction 279 302 - -
Vium3420g00025 1044 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 360 525 IPR014001 -
Vium3420g00025 1044 PANTHER SNF2/RAD54 FAMILY MEMBER 118 1023 - -
Vium3420g00025 1044 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 589 871 IPR027417 -
Vium3420g00025 1044 Gene3D - 597 893 IPR027417 -
Vium3420g00025 1044 SMART helicmild6 724 807 IPR001650 -
Vium3420g00025 1044 MobiDBLite consensus disorder prediction 959 980 - -
Vium3420g00025 1044 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 698 857 IPR001650 -
Vium3420g00025 1044 FunFam Protein CHROMATIN REMODELING 24 327 595 - -
Vium3420g00025 1044 SMART ultradead3 343 536 IPR014001 -
Vium3420g00025 1044 Pfam Helicase conserved C-terminal domain 695 807 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3420g00025 Vium-Chr3420 190893 199792 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3420g00025 693 861 RAD5 or RAD16-like Gene Family AT5G22750 34.320 1.58e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium3420g00025 SNF2_N 3.9e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3420g00025 K20093 - gmx:100779283 1620.91