Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3420g00018 ATGCAAGGAGAATTGGAATTACCACCCGGGTTTAGATTCCACCCCACCGACGATGAACTCGTGAATCACTACTTGTGTAGAAAGTGTGCTGCTCAGTCCATTGCCGCTCCCATCATCAAAGAAATCGATTTGTATAAGTTTGATCCATGGCAGCTTCCAGACATGGCTCTTTACGGTGAGAAAGAGTGGTACTTTTTCTCCCCTCGTGACCGAAAATACCCAAACGGTTCACGACCGAACCGGGCTGCTGGAACCGGGTACTGGAAGGCCACCGGAGCGGATAAACCTATTGGAAAACCGGAAGCCCGTGGAATTAAGAAAGCCCTTGTGTTCTACGCGGGGAAAGCTCCGAAAGGGGTTAAGACAAATTGGATCATGCACGAATATCGCTTAGCCAACGTCGATAGATCTGCCTCCAAGAAAAACAACAATTTGAGGCTTGATGATTGGGTGTTATGTCGAATTTACAACAAGAAAGGGAAGATTGAGAAGTACAATAATGTCGACGAGGTTGTGGAACAGAAACCGGCGAAATTACCGGAGGAGATTCTGTTCCAGCACGAGATGAAGCCTGAGATCCAGATGTACGGCCACGATCATTTCAGGAATAACCAATTGTACATGGACACGTCGGATTCCGTGCCGAGGTTAAACACGGACTCTAGCTGCTCCGAGCACGTGGTTTCGCCGGACGGCACCTGCGAGAAGGAGGTGCAGAGCGAGCCCAAGTGGAACGACCTGGAGTTGGGCCCGGACCTGGTTTCGGGCTACGATTTTAATTTCATGGAGCTGTCAGCAGATGACGCTTTTGCCCATCAGGCCCAGTTCCAAATGAACCAGCCCTCGACGTGGCAAGATATGTTCGCGTACCTTCCGAAGATATTTTAA 888 0.4966 MQGELELPPGFRFHPTDDELVNHYLCRKCAAQSIAAPIIKEIDLYKFDPWQLPDMALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGKPEARGIKKALVFYAGKAPKGVKTNWIMHEYRLANVDRSASKKNNNLRLDDWVLCRIYNKKGKIEKYNNVDEVVEQKPAKLPEEILFQHEMKPEIQMYGHDHFRNNQLYMDTSDSVPRLNTDSSCSEHVVSPDGTCEKEVQSEPKWNDLELGPDLVSGYDFNFMELSADDAFAHQAQFQMNQPSTWQDMFAYLPKIF 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3420g00018 295 ProSiteProfiles NAC domain profile. 7 158 IPR003441 GO:0003677|GO:0006355
Vium3420g00018 295 FunFam NAC transcription factor 16 162 - -
Vium3420g00018 295 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Vium3420g00018 295 PANTHER NAC TRANSCRIPTION FACTOR 56 7 208 - -
Vium3420g00018 295 Gene3D NAC domain 16 164 IPR036093 GO:0003677|GO:0006355
Vium3420g00018 295 SUPERFAMILY NAC domain 3 158 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3420g00018 Vium-Chr3420 119596 120841 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3420g00018 1 295 NAC Transcription Factor Family AT1G01720 61.967 6.37e-123 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium3420g00018 NAM 2.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3420g00018 - - gmx:100170751 531.176