Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3420g00016 ATGATGCATGCTGCATGGAACGATTTTGAAATTTTAGTTTTGGACATCACTACCAAAGATTTATCTGCTTCTTGTCCTACCATGAAAAGCCTCTGCCTTGGGCCGTTCCTTGCTGTTAGTGACCCAGTTAGTTCAAGAGCCTTTGGAGGCCATATAACCAGAAAGTGCTTCCCCAAGCAAGTTCATTTCCACTCCCGTTCTTTTGTTTTCTCTTCAATCTTATGTTCTGCAACTCTATCAGTATTGCCAGAATTAGAAGAGAAGCAGATATTTGATGGAGAGAAGGCTAATTTGCTTGTTAGAGATCTCAGAAAGTGCTTTGATTCAGGCAGGACAAAGAGTTATGAATGGAGGGTTTCCCAGTTGGAGGCCATTATTAAGATGTTAAAAGAGAAAGAAAAGGAAATTACTGAAGCTCTATATAAGGATCTTGCTAAACCTCAACTTGAAGCATTTATATCTGAGGTTTCCCAGGCAAAATCCTCATGCAGTGAAGCACTTAAGGAGCTGAAACAATGGATGAAGCCTGAGAGGGTGAGTACTTCAATCACGACATTTCCATCATCAGCAGAGATTGTGCCAGAACCGCTGGGGGTTGTGTTGGTTATCTCAACATGGAACTTTCCTTTCTTGTTATCAATGGATCCGGTTATTGGAGCCATTTCTGCGGGTAATGCAGTGGTCCTTAAACCATCAGAAATTGCTCCAGCAACATCATCACTTCTTGCAAATTTGGTCGAACAATATTTAGACAACTCTGCCATCAGAGTTGTTGAAGGAGCTGTTCCTGAAACAACTGCACTCCTGGAGCAGAAATGGGATAAGATACTTTATACAGGTAGTGCTAGAGTGGGTCGGATTGTCCTGGCTGCGGCTGCAAAGCATCTTACACCAGTGATTCTAGAACTTGGAGGAAAGTGCCCTGCTGTTGTTGAATCAGATGTCAACTTACAAGTTACTGCTAGGAGGATAATAGCTGGCAAGTGGGCATGCAACAGTGGGCAAGCATGCATTGCTGTTGATTATGTCATCACAAGAAAAGAGTTTGCTCCAAAGCTGATAAGTGCCTTAAAAGAAGAATTGGAACAATTTTTTGGTAAAGATCCATTGGAATCAAAAGACATGTCACGGATTGTGTCTTCTAACCAGTTTGCGCGGCTTGTGAAACTCTTGGATGAGGATAAGGTATCTGACAAAATTGTTTTAGGAGGTCAGAGGGATGAGAAGAAATTAAAAATTTCCCCAACTATCATATTAGGTGTTCCTGAAGATGCTTTGGTAATGCAGGAGGAGATATTTGGGCCAATATTGCCAATCATCACAGTAGACAACATAGAAGATTGCTACAGTATAATCAAATCAAGGCCAAAACCTCTTGCTGCATATCTCTTCACAAACAATGAGCAGCTGAAGAAGGATTATGTGGATAAGATATCGTCAGGAGGGATACTCATCAATGACGCTGTCATCCATGTTGCAACTCGTGGTTTGCCTTTTGGAGGAGTTGAAGAGAGTGGAATGGGTTGTTACCATGGAAAATTCTCTTTTGATAGTTTCAGTCATAGGAAGTCAGTTCTCTATAGAAGTTTTGATGCAGATTCATCCATAAGGTACCCCCCATACACACCTGAGAAGGAAAAATTATTGAAGGCCGTTATCAGTGGCAATATTGTTCAAATAATTCTTGCTCTTTTTGGATGGTCTTAA 1707 0.4118 MMHAAWNDFEILVLDITTKDLSASCPTMKSLCLGPFLAVSDPVSSRAFGGHITRKCFPKQVHFHSRSFVFSSILCSATLSVLPELEEKQIFDGEKANLLVRDLRKCFDSGRTKSYEWRVSQLEAIIKMLKEKEKEITEALYKDLAKPQLEAFISEVSQAKSSCSEALKELKQWMKPERVSTSITTFPSSAEIVPEPLGVVLVISTWNFPFLLSMDPVIGAISAGNAVVLKPSEIAPATSSLLANLVEQYLDNSAIRVVEGAVPETTALLEQKWDKILYTGSARVGRIVLAAAAKHLTPVILELGGKCPAVVESDVNLQVTARRIIAGKWACNSGQACIAVDYVITRKEFAPKLISALKEELEQFFGKDPLESKDMSRIVSSNQFARLVKLLDEDKVSDKIVLGGQRDEKKLKISPTIILGVPEDALVMQEEIFGPILPIITVDNIEDCYSIIKSRPKPLAAYLFTNNEQLKKDYVDKISSGGILINDAVIHVATRGLPFGGVEESGMGCYHGKFSFDSFSHRKSVLYRSFDADSSIRYPPYTPEKEKLLKAVISGNIVQIILALFGWS 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3420g00016 568 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 305 505 IPR016163 GO:0016620
Vium3420g00016 568 SUPERFAMILY ALDH-like 99 541 IPR016161 GO:0016491
Vium3420g00016 568 Coils Coil 119 139 - -
Vium3420g00016 568 PANTHER ALDEHYDE DEHYDROGENASE 95 560 IPR012394 GO:0006081
Vium3420g00016 568 FunFam Aldehyde dehydrogenase 104 308 - -
Vium3420g00016 568 FunFam Aldehyde dehydrogenase 305 505 - -
Vium3420g00016 568 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 330 341 IPR016160 GO:0016491
Vium3420g00016 568 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 104 523 IPR016162 GO:0016491
Vium3420g00016 568 Pfam Aldehyde dehydrogenase family 94 525 IPR015590 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3420g00016 Vium-Chr3420 106364 111071 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3420g00016 43 568 Aldehyde Dehydrogenase Gene Family AT4G34240 65.779 0.0 702
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3420g00016 K00128 - gmx:100800699 974.156