Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3420g00015 ATGGGCAGAGAAAATGATTCAGCAAGGACAAAGGAAGAAGTTAGTGACGATGGTTCCTCGAGTGTTGAGAATGGGGATTTAGAGTCTCATGCTCGAATTAGTCTGGACAAGGAAGGCTTGGAAACTTGTCGTGTGTGCCAATGTACTGAATCTGATAAAAGGGCAGATGCGGCGCTAGAATTTTTGGGCATCACCCCAGGTTCAGAATTGTATAAAAGCAAGGGGGAAGTAGGGTGTGATGGCAATGGAATTCCCAGAAATATGTCTCTTAACAGAAACATTGAAAAAAATACAGGGATGGTGGAATTTGTAAGCCCTGATGGGGAGGTTTTCATATGTAAAAGCGATTTGGAACTCGGTTTGTCTCATCAAGATAAACTAGTTGAACTTGGATGTTCTTGTAAAAACGATCTTGCTTTAGTACATTATGCTTGTGCACTCAAGTGGTTTGTCAACCATGGATCTACAATTTGTGAAATATGTGGACATATAGCAAATAATATCAGAGTTTCTGACTTCAATAAAGTTGTTGGTGCTTTGAAGGAGTATGAAGTATTGAGGGAAAGAACCGCTAGTGGTGATCCTGGTCCAGCACAAGCTCGTGCAAATGCTGGTGTGGACCCTGATGCAGTGGCTGCTATTCGGAGGCAACGGCTAATTGAGATTGCACTGTGGTTTTGTCCTCATAATAGCAGTACCAATAACAACGTTAGCAATGTGGACACAGTCTCACAGGTTGCTTCTGAGCAGCCTTTGAGTATTGTTACTGAAGATGCTGTCCCTGTACAAAATACTGCAACTAAATGGGCCGTGGAGGGTACAGGTATCCTGCTTGCTACGGGACTGCTTACCATCACCCTTGCGTGGCTTATAGCCCCTCGTGTTGGAAAGAAAACTGCTAAAAGTGGTCTTCATATCTTACTTGGAGGGGTTTGTGCTTTAGCAGTTGTGGTTTTCTTCCGCTTTTTTGTGCTTACCAGAATCAAGTATGGACCTGCACGTTATTGGGCAATCTTGTTCGTTTTCTGGTTTCTTGTGTTCGGAATATGGGCTTCAAGAGCCCATGGTGCACATACAACATGA 1083 0.434 MGRENDSARTKEEVSDDGSSSVENGDLESHARISLDKEGLETCRVCQCTESDKRADAALEFLGITPGSELYKSKGEVGCDGNGIPRNMSLNRNIEKNTGMVEFVSPDGEVFICKSDLELGLSHQDKLVELGCSCKNDLALVHYACALKWFVNHGSTICEICGHIANNIRVSDFNKVVGALKEYEVLRERTASGDPGPAQARANAGVDPDAVAAIRRQRLIEIALWFCPHNSSTNNNVSNVDTVSQVASEQPLSIVTEDAVPVQNTATKWAVEGTGILLATGLLTITLAWLIAPRVGKKTAKSGLHILLGGVCALAVVVFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRAHGAHTT 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3420g00015 360 ProSiteProfiles Zinc finger RING-CH-type profile. 102 168 IPR011016 GO:0008270
Vium3420g00015 360 SUPERFAMILY RING/U-box 125 164 - -
Vium3420g00015 360 PANTHER ZINC FINGER, RING-CH-TYPE 11 327 - -
Vium3420g00015 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 164 IPR013083 -
Vium3420g00015 360 SMART ringv_2 112 162 IPR011016 GO:0008270
Vium3420g00015 360 MobiDBLite consensus disorder prediction 1 18 - -
Vium3420g00015 360 MobiDBLite consensus disorder prediction 1 30 - -
Vium3420g00015 360 Pfam RING-variant domain 127 161 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3420g00015 Vium-Chr3420 96324 100988 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3420g00015 1 350 C3H Transcription Factor Family AT5G08750 64.820 1.98e-155 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3420g00015 - - gmx:100805323 583.563