Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3420g00013 ATGGGCAGAGAAAATGATTCAGCAAGGACAAAGGAAGAAGTTAGTGACGATGGTTCCTCGAGTGTTGAGAATGGGGATTTAGAGTCTCATGCTCGAATTAGTCTGGACAAGGAAGGCTTGGAAACTTGTCGTGTGTGCCAATGTACTGAATCTGATAAAAGGGCAGATGCGGCGCTAGAATTTTTGGGCATCACCCCAGGTTCAGAATTGTATAAAAGCAAGGGGGAAGTAGGGTGTGATGGCAATGGAATTCCCAGAAATATGTCTCTTAACAGAAACATTGAAAAAAATACAGGGATGGTGGAATTTGTAAGCCCTGATGGGGAGGTTTTCATATGTAAAAGCGATTTGGAACTCGGTTTGTCTCATCAAGATAAACTAGTTGAACTTGGATGTTCTTGTAAAAACGATCTTGCTTTAGTACATTATGCTTGTGCACTCAAGTGGTTTGTCAACCATGGATCTACAATTTGTGAAATATGTGGACATATAGCAAATAATATCAGAGTTTCTGACTTCAATAAAGTTGTTGGTGCTTTGAAGGAGTATGAAGTATTGAGGGAAAGAACCGCTAGTGGTGATCCTGGTCCAGCACAAGCTCGTGCAAATGCTGGTGTGGACCCTGATGCAGTGGCTGCTATTCGGAGGCAACGGCTAATTGAGATTGCACTGTGGTTTTGTCCTCATAATAGCAGTACCAATAACAACGTTAGCAATGTGGACACAGTCTCACAGGTTGCTTCTGAGCAGCCTTTGAGTATTGTTACTGAAGATGCTGTCCCTGTACAAAATACTGCAACTAAATGGGCCGTGGAGGGTACAGGTATCCTGCTTGCTACGGGACTGCTTACCATCACCCTTGCGTGGCTTATAGCCCCTCGTGTTGGAAAGGCTTAA 897 0.4359 MGRENDSARTKEEVSDDGSSSVENGDLESHARISLDKEGLETCRVCQCTESDKRADAALEFLGITPGSELYKSKGEVGCDGNGIPRNMSLNRNIEKNTGMVEFVSPDGEVFICKSDLELGLSHQDKLVELGCSCKNDLALVHYACALKWFVNHGSTICEICGHIANNIRVSDFNKVVGALKEYEVLRERTASGDPGPAQARANAGVDPDAVAAIRRQRLIEIALWFCPHNSSTNNNVSNVDTVSQVASEQPLSIVTEDAVPVQNTATKWAVEGTGILLATGLLTITLAWLIAPRVGKA 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3420g00013 298 PANTHER ZINC FINGER, RING-CH-TYPE 11 290 - -
Vium3420g00013 298 ProSiteProfiles Zinc finger RING-CH-type profile. 102 168 IPR011016 GO:0008270
Vium3420g00013 298 SUPERFAMILY RING/U-box 125 164 - -
Vium3420g00013 298 Pfam RING-variant domain 127 161 IPR011016 GO:0008270
Vium3420g00013 298 SMART ringv_2 112 162 IPR011016 GO:0008270
Vium3420g00013 298 MobiDBLite consensus disorder prediction 1 18 - -
Vium3420g00013 298 MobiDBLite consensus disorder prediction 1 30 - -
Vium3420g00013 298 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 164 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3420g00013 Vium-Chr3420 96322 98504 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3420g00013 1 297 C3H Transcription Factor Family AT5G08750 60.714 2.79e-115 335