Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3420g00010 ATGCTTCTTGCTTCGCAGATTAGTATGTCGCTCATTGCGTTAGCTGCACCTGCCTCTCCCACTGCTCTCGCTTTTCGCCGCGGAGCGAAGCAATGGAGCGCGCTATTTCCGAAAAGCAGGGGAACTGGTTCGTCCTTGTTCGCAAACTCTCTCAGGAAACGGTTGCGATTGCGGTTTTTCGCTTCGGGAAATAATGGCGGCATTGTGGAGGAGATATCTGAAGCCGAAAAAGAGCCTAAGAATTTTGCGTGGCCTGATAACAAGAAACCTAGAGTGTGCATATTAGGCGGTGGATTTGGCGGCTTATATACTGCTTTGAGGTTGGAATCATTGGAGTGGCCTGATGATAACAAACCACAGATTATTCTTGTGGATCAGTCTGAACGTTTTGTTTTCAAGCCAATGTTGTATGAGCTTCTATCGGGAGAAGTGGATGAATGGGAAATAGCTCCTCGTTTCTTAGATTTGCTGGCAAACACTAGTGTGCAGTTTTTCAAAGACAGAGTAAAAGTTTTGCATCCCTCTGATCATTGGGGAATGAATGTATCCAAAGAATCTAGATGTGGAGGAACTGTTTATCTTGAAAGCGGCCTTCAGATTGAATATGACTGGCTGGTTCTTGCATTAGGCGCTGAAGCTAAACTAGATGTTGTACCAGGGGCAGCGGAATTTGCAATTCCTTTCTCAACGCTAGAAGATGCACGTAAAGTCAATGATAAATTAACAACATTAGAGAGAAAGACCTTTGGAAAGGACGTTCAAATTAGTGTAGCTGTTGTTGGTTGTGGTTACTCGGGAGTTGAATTGGCTGCAACACTAGCAGAGCGATTACAGAACAGAGGAATTGTGAGAGCAATTAATGTTGAAACTATGATTTGCCCGAATGCCCCACCAGCAAACAGGGAAGCTGCACTAAAAGTTCTTTCATCAAGGAAAGTCGAACTTTTATTGGGTTATTTTGTCCGCTGTATTAGGAAGCTCAGTGAATTGGAATCTTCAGATACCTTGACAGGGGTGGATGAAAATAGTACTGAAGTAGCACCTGCTATTGAGAAATATATATTGGAGCTACAACCTGCTGAAAGGGGAATGCAGAGTGCAATCATCGAAGCAGATCTGGTATTATGGACTGTTGGAACCAAACCTCCTCTTCCTCAGCTAGAACCTTCAGATGCACCATTTGTAATTCCACTCAATGCTAGAGGACAGGCTGAAACAGATGAAACACTCCGTGTTAAGGGTCATCCCCGGATATTTGCCCTCGGCGACTCCTCTGCATTGAGGGATTCAAGTGGAAAGATCCTTCCAGCCACTGCACAGGTTGCATTTCAGCAAGCAGACTTCACTGGTTGGAATCTGTGGGCTGCAATCAATGGGCGTCCACTTTTGCCATTTAGGTTTCAGAATCTAGGTGAGATGATGACCCTGGGAAGAAATGATGCTGTCATTTCTCCAAGTTTTGTTGATGGATTGACATTAGAAGGACCTGTTGGTCATACTGCGAGGAAGATAGCTTATTTGATCAGGTTACCAACAGATGAACATAGGCTTAAAGTGGGGATTAGCTGGCTTACGAAATCTTCCATTGATTTGGTGTCATCGCTGCAAAGTACCTTGTACAAGGTCCTTTCGGGCTCTTAG 1641 0.4449 MLLASQISMSLIALAAPASPTALAFRRGAKQWSALFPKSRGTGSSLFANSLRKRLRLRFFASGNNGGIVEEISEAEKEPKNFAWPDNKKPRVCILGGGFGGLYTALRLESLEWPDDNKPQIILVDQSERFVFKPMLYELLSGEVDEWEIAPRFLDLLANTSVQFFKDRVKVLHPSDHWGMNVSKESRCGGTVYLESGLQIEYDWLVLALGAEAKLDVVPGAAEFAIPFSTLEDARKVNDKLTTLERKTFGKDVQISVAVVGCGYSGVELAATLAERLQNRGIVRAINVETMICPNAPPANREAALKVLSSRKVELLLGYFVRCIRKLSELESSDTLTGVDENSTEVAPAIEKYILELQPAERGMQSAIIEADLVLWTVGTKPPLPQLEPSDAPFVIPLNARGQAETDETLRVKGHPRIFALGDSSALRDSSGKILPATAQVAFQQADFTGWNLWAAINGRPLLPFRFQNLGEMMTLGRNDAVISPSFVDGLTLEGPVGHTARKIAYLIRLPTDEHRLKVGISWLTKSSIDLVSSLQSTLYKVLSGS 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3420g00010 546 PRINTS Pyridine nucleotide disulphide reductase class-I signature 418 425 - -
Vium3420g00010 546 PRINTS Pyridine nucleotide disulphide reductase class-I signature 91 113 - -
Vium3420g00010 546 PRINTS Pyridine nucleotide disulphide reductase class-I signature 256 281 - -
Vium3420g00010 546 Pfam Pyridine nucleotide-disulphide oxidoreductase 91 446 IPR023753 GO:0016491
Vium3420g00010 546 SUPERFAMILY FAD/NAD(P)-binding domain 90 468 IPR036188 -
Vium3420g00010 546 PANTHER APOPTOSIS-INDUCING FACTOR 1 29 542 - -
Vium3420g00010 546 PRINTS FAD-dependent pyridine nucleotide reductase signature 92 111 - -
Vium3420g00010 546 PRINTS FAD-dependent pyridine nucleotide reductase signature 256 274 - -
Vium3420g00010 546 PRINTS FAD-dependent pyridine nucleotide reductase signature 371 387 - -
Vium3420g00010 546 PRINTS FAD-dependent pyridine nucleotide reductase signature 202 220 - -
Vium3420g00010 546 Gene3D - 87 518 - -
Vium3420g00010 546 FunFam Alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial 87 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3420g00010 Vium-Chr3420 71746 76556 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3420g00010 88 447 Chloroplast and Mitochondria Gene Families AT4G21490 22.432 6.36e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3420g00010 K17872 - gmx:100795521 961.444