Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3420g00009 ATGTCGCTCATTGCGTTAGCTGCACCTGCCTCTCCCACTGCTCTCGCTTTTCGCCGCGGAGCGAAGCAATGGAGCGCGCTATTTCCGAAAAGCAGGGGAACTGGTTCGTCCTTGTTCGCAAACTCTCTCAGGAAACGGTTGCGATTGCGGTTTTTCGCTTCGGGAAATAATGGCGGCATTGTGGAGGAGATATCTGAAGCCGAAAAAGAGCCTAAGAATTTTGCGTGGCCTGATAACAAGAAACCTAGAGTGTGCATATTAGGCGGTGGATTTGGCGGCTTATATACTGCTTTGAGGTTGGAATCATTGGAGTGGCCTGATGATAACAAACCACAGATTATTCTTGTGGATCAGTCTGAACGTTTTGTTTTCAAGCCAATGTTGTATGAGCTTCTATCGGGAGAAGTGGATGAATGGGAAATAGCTCCTCGTTTCTTAGATTTGCTGGCAAACACTAGTGTGCAGTTTTTCAAAGACAGAGTAAAAGTTTTGCATCCCTCTGATCATTGGGGAATGAATGTATCCAAAGAATCTAGATGTGGAGGAACTGTTTATCTTGAAAGCGGCCTTCAGATTGAATATGACTGGCTGGTTCTTGCATTAGGCGCTGAAGCTAAACTAGATGTTGTACCAGGGGCAGCGGAATTTGCAATTCCTTTCTCAACGCTAGAAGATGCACGTAAAGTCAATGATAAATTAACAACATTAGAGAGAAAGACCTTTGGAAAGGACGTTCAAATTAGTGTAGCTGTTGTTGGTTGTGGTTACTCGGGAGTTGAATTGGCTGCAACACTAGCAGAGCGATTACAGAACAGAGGAATTGTGAGAGCAATTAATGTTGAAACTATGATTTGCCCGAATGCCCCACCAGCAAACAGGGAAGCTGCACTAAAAGTTCTTTCATCAAGGAAAGTCGAACTTTTATTGGGTTATTTTGTCCGCTGTATTAGGAAGCTCAGTGAATTGGAATCTTCAGATACCTTGACAGGGGTGGATGAAAATAGTACTGAAGTAGCACCTGCTATTGAGAAATATATATTGGAGCTACAACCTGCTGAAAGGGGAATGCAGAGTGCAATCATCGAAGCAGATCTGGTATTATGGACTGTTGGAACCAAACCTCCTCTTCCTCAGCTAGAACCTTCAGATGCACCATTTGTAATTCCACTCAATGCTAGAGGACAGGCTGAAACAGATGAAACACTCCGTGTTAAGGGTCATCCCCGGATATTTGCCCTCGGCGACTCCTCTGCATTGAGGGATTCAAGTGGAAAGATCCTTCCAGCCACTGCACAGGTTGCATTTCAGCAAGCAGACTTCACTGGTTGGAATCTGTGGGCTGCAATCAATGGGCGTCCACTTTTGCCATTTAGGTTTCAGAATCTAGGTGAGATGATGACCCTGGGAAGAAATGATGCTGTCATTTCTCCAAGTTTTGTTGATGGATTGACATTAGAAGGACCTGTTGGTCATACTGCGAGGAAGATAGCTTATTTGATCAGGTTACCAACAGATGAACATAGGCTTAAAGTGGGGATTAGCTGGCTTACGAAATCTTCCATTGATTTGGTGTCATCGCTGCAAAGTACCTTGTACAAGGTCCTTTCGGGCTCTTAG 1617 0.4453 MSLIALAAPASPTALAFRRGAKQWSALFPKSRGTGSSLFANSLRKRLRLRFFASGNNGGIVEEISEAEKEPKNFAWPDNKKPRVCILGGGFGGLYTALRLESLEWPDDNKPQIILVDQSERFVFKPMLYELLSGEVDEWEIAPRFLDLLANTSVQFFKDRVKVLHPSDHWGMNVSKESRCGGTVYLESGLQIEYDWLVLALGAEAKLDVVPGAAEFAIPFSTLEDARKVNDKLTTLERKTFGKDVQISVAVVGCGYSGVELAATLAERLQNRGIVRAINVETMICPNAPPANREAALKVLSSRKVELLLGYFVRCIRKLSELESSDTLTGVDENSTEVAPAIEKYILELQPAERGMQSAIIEADLVLWTVGTKPPLPQLEPSDAPFVIPLNARGQAETDETLRVKGHPRIFALGDSSALRDSSGKILPATAQVAFQQADFTGWNLWAAINGRPLLPFRFQNLGEMMTLGRNDAVISPSFVDGLTLEGPVGHTARKIAYLIRLPTDEHRLKVGISWLTKSSIDLVSSLQSTLYKVLSGS 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3420g00009 538 PRINTS Pyridine nucleotide disulphide reductase class-I signature 410 417 - -
Vium3420g00009 538 PRINTS Pyridine nucleotide disulphide reductase class-I signature 248 273 - -
Vium3420g00009 538 PRINTS Pyridine nucleotide disulphide reductase class-I signature 83 105 - -
Vium3420g00009 538 PRINTS FAD-dependent pyridine nucleotide reductase signature 363 379 - -
Vium3420g00009 538 PRINTS FAD-dependent pyridine nucleotide reductase signature 194 212 - -
Vium3420g00009 538 PRINTS FAD-dependent pyridine nucleotide reductase signature 84 103 - -
Vium3420g00009 538 PRINTS FAD-dependent pyridine nucleotide reductase signature 248 266 - -
Vium3420g00009 538 Gene3D - 79 510 - -
Vium3420g00009 538 PANTHER APOPTOSIS-INDUCING FACTOR 1 21 534 - -
Vium3420g00009 538 Pfam Pyridine nucleotide-disulphide oxidoreductase 83 438 IPR023753 GO:0016491
Vium3420g00009 538 FunFam Alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial 79 511 - -
Vium3420g00009 538 SUPERFAMILY FAD/NAD(P)-binding domain 82 460 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3420g00009 Vium-Chr3420 71746 76654 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3420g00009 80 439 Chloroplast and Mitochondria Gene Families AT4G21490 22.432 7.46e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3420g00009 K17872 - gmx:100795521 961.444