Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium341g00018 ATGCCAACATGTTTCATTTTCTTTGATCTCAATCCAAATAGAGACAGTCCTGTATCCCAAGATGCAACATTGGAGCTTGACACCACTGGCAACCTTGTTCTCGTGGATGGAGACATCACAGTGTGGACCTCAAACACCTCAGGTGCCGGTGTTCAAGCAGCAGTCATGGCAGAATCCGGCAACTTCATCCTCCAGAACGCCAACAACCACCCTGTGTGGCAGAGTTTTTCTCAACCTTCCGACACTCTCCTCCCCAACCAGCTTCTAACAGTGTCTTCAGAACTAACTTCATCTAAGTCTTCTTCTCATGGTGGCTACTATTCTCTCAAAATGCTTCAACAGCGTACTTCCTTAAGCCTTGCTCTCACTTACAATCTCCTTGAGACTTACCAAGCCTCAGATGAATCATACACCAACTATTCCTATTGGAAAGGCCCTGATATCTCCAATGTGACTGGGGAGGTTATAGCAGTTTTAGACCATGCTGGGAGCTTTGGGATTGTGTATGGAGACTCCTCTGATGGTGCAGTGTATGTGTACAAGAATGATGGTGACGATGCAGGCTTGCCTTCTGCAGTTAATCAATCTGCACCATCGACTGTTCTCAGGAGACTAACACTGGAAAAGAATGGCAATCTGCGGTTGTATCGATGGGACGAAGTGAATGGCTCAAGGCAGTGGGTGCCACAGTGGGCTGCAGTTTCAAATCCATGTGACATTGCTGGAGTTTGTGGCAACGGGGTTTGCAATTTGGATAGAAGTAAGACAAAAGCCACTTGCACTTGCTTGCCAGGAACTTCTAAAGTTGGGAGGGATGGTCTGTGCTATGAGAATTCATCTCTAGTGGGAAAATGCAATGGCAAACACGAAAACCTGACATCCCAGTTTAGGATTTCGACGGTGCAGCAAACCAACTATTATTTTTCTGACATTTCAGTTATAGCTAACTACAGTGATATTTCTAATGAGTCAAAATGTGGGGATGCTTGCTTGTCAGAATGTGATTGCGTGGCTTCTGTTTATGGGCTAAATGAGGAGAGAGCATATTGTTGGGTGTTGAGGAGCTTAAGTTATGGTGGTTTTGAAGATACAGGATCAACTTTGTTTGTGAAAGTAAGAGCAAATGGGTCATGGACTCCAGAAGGCCAAGGAGGGTCTAATAATAGCTCTTCTGGTGGAATGGGAAGTGCAAAGGAGAAGGCTGTGATTATTCCCACTGTTTTTAGCATGGTAGTTCTCATTGTTTTGCTGAGTTTATTACTGTATTACAGCGTTCACAGGAAAAGAACTTTGAAAAGGGAGATGGAAAGTTCCTTGATCTTATCAGGTGCTCCAATGAATTTCACATACCGTGATTTGCAGATCAGGACATGCAACTTTTCACAGCTGCTAGGAACAGGTGGGTTTGGCAGTGTATATAAAGGAAGCCTGGGAGACGGTACTCTAGTGGCAGTGAAGAAACTTGACAGGGTTTTGCCCCATGGAGAGAAGGAATTCATCACTGAAGTAAACACTATTGGCTCAATGCATCATATGAATTTGGTTCGCCTATGCGGCTATTGTTCTGAGGGGTCACATAGGCTTCTGGTTTATGAGTTCATGAAGAATGGGTCCTTGGATAAGTGGATCTTCACTTCGTATCAAGGGCGAGATAGATTGTTGGATTGGACAACTCGTTTCAATATAGCCATAGCTACTGCACAAGGAATTGCATACTTTCATGAACAATGCAGGGATAGGATAATACACTGTGACATAAAACCGGAGAATATATTGGTGGACGACAACTTTTGTCCTAAAGTATCTGATTTTGGACTGGCGAAATTGATGGGAAGGGAGCACTCTCATGTGGTGACAATGGTGAGAGGCACAAGAGGTTATTTGGCACCAGAATGGGTTAGTAATCGCCCTATAACTGTCAAAGCTGATGTTTACAGCTATGGGATGCTTCTTTTAGAGATCATTGGTGGTAGGAGAAATCTTGACATGTCCTTTGGTCCTGAGGATTTCTTCTATCCTGGTTGGGCTTACAAGGAGATGACAAATGGGTCAACAATTAAAGTGGCAGATAGAAGATTAAATGGGGCAGTTGATGAAGAAGAGCTAACGAGAGCTCTGAAAGTTGCATTTTGGTGCATCCAAGATGAGGTATCCATGCGACCAACAATGGGGGAAGTGGTGAGACTTCTGGAAGATACGGTGGACATTAATATGCCACCGATGCCACAAACAGTGCTAGAGTTAATTGAGGAAGGCTTAGACCATGTATACAAAGCTATGAAAAGAGAGAATAATCACTCCAGCTCATTCACTCTTACAAGCCATCTCACATCTCGTGCCACATGTAGCAATTCCACAATGTCACCGAGATAG 2373 0.4399 MPTCFIFFDLNPNRDSPVSQDATLELDTTGNLVLVDGDITVWTSNTSGAGVQAAVMAESGNFILQNANNHPVWQSFSQPSDTLLPNQLLTVSSELTSSKSSSHGGYYSLKMLQQRTSLSLALTYNLLETYQASDESYTNYSYWKGPDISNVTGEVIAVLDHAGSFGIVYGDSSDGAVYVYKNDGDDAGLPSAVNQSAPSTVLRRLTLEKNGNLRLYRWDEVNGSRQWVPQWAAVSNPCDIAGVCGNGVCNLDRSKTKATCTCLPGTSKVGRDGLCYENSSLVGKCNGKHENLTSQFRISTVQQTNYYFSDISVIANYSDISNESKCGDACLSECDCVASVYGLNEERAYCWVLRSLSYGGFEDTGSTLFVKVRANGSWTPEGQGGSNNSSSGGMGSAKEKAVIIPTVFSMVVLIVLLSLLLYYSVHRKRTLKREMESSLILSGAPMNFTYRDLQIRTCNFSQLLGTGGFGSVYKGSLGDGTLVAVKKLDRVLPHGEKEFITEVNTIGSMHHMNLVRLCGYCSEGSHRLLVYEFMKNGSLDKWIFTSYQGRDRLLDWTTRFNIAIATAQGIAYFHEQCRDRIIHCDIKPENILVDDNFCPKVSDFGLAKLMGREHSHVVTMVRGTRGYLAPEWVSNRPITVKADVYSYGMLLLEIIGGRRNLDMSFGPEDFFYPGWAYKEMTNGSTIKVADRRLNGAVDEEELTRALKVAFWCIQDEVSMRPTMGEVVRLLEDTVDINMPPMPQTVLELIEEGLDHVYKAMKRENNHSSSFTLTSHLTSRATCSNSTMSPR 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium341g00018 790 Pfam D-mannose binding lectin 13 94 IPR001480 -
Vium341g00018 790 SUPERFAMILY Protein kinase-like (PK-like) 436 730 IPR011009 -
Vium341g00018 790 Gene3D Phosphorylase Kinase; domain 1 422 533 - -
Vium341g00018 790 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 534 740 - -
Vium341g00018 790 CDD B_lectin 13 79 IPR001480 -
Vium341g00018 790 PANTHER OS07G0415500 PROTEIN 17 742 - -
Vium341g00018 790 SUPERFAMILY alpha-D-mannose-specific plant lectins 13 94 IPR036426 -
Vium341g00018 790 ProSitePatterns Serine/Threonine protein kinases active-site signature. 581 593 IPR008271 GO:0004672|GO:0006468
Vium341g00018 790 ProSiteProfiles Protein kinase domain profile. 458 734 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium341g00018 790 CDD STKc_IRAK 464 731 - -
Vium341g00018 790 ProSitePatterns Protein kinases ATP-binding region signature. 464 487 IPR017441 GO:0005524
Vium341g00018 790 FunFam serine/threonine-protein kinase PBS1-like 426 533 - -
Vium341g00018 790 Gene3D - 10 94 IPR036426 -
Vium341g00018 790 SMART serkin_6 458 730 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium341g00018 790 Pfam Protein kinase domain 461 726 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium341g00018 790 SMART blect_4 5 79 IPR001480 -
Vium341g00018 790 Pfam S-locus glycoprotein domain 198 266 IPR000858 GO:0048544
Vium341g00018 790 PIRSF SRK 11 785 IPR024171 GO:0004674
Vium341g00018 790 Gene3D Transferase(Phosphotransferase) domain 1 534 746 - -
Vium341g00018 790 ProSiteProfiles Bulb-type lectin domain profile. 1 77 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium341g00018 Vium-Chr341 133994 138235 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium341g00018 441 740 Receptor kinase-like Gene Family AT5G20050 45.223 3.39e-77 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vium341g00018 Pkinase 1.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium341g00018 - - pvu:PHAVU_007G0773000 1441.4