Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium341g00017 ATGGCCAATGCTGCTTACTCTTCCTTTTCATGTTACTGCCTAATTCTTGCTTTGGGCCTCTCTTCTTTTAGTACCTGCATTTCGGCCCACGTTGCCTTGGGCTCCAGGTTATTGTCTAGCAAGGCCCTAACTTGGGTTTCAGAAAACGGCACATTTGCTTTCGGGTTCACTCCAGCAGATACCGATAATCGATTGTTTGTGCTTGGCGTTTGGTTTGCACAGCTTCCAGGAGATCCAACTATAGTTTGGTCACCCAATAGAGACAGTCCTGTATCCCAAGATGCAACATTGGAGCTTGACACCACTGGCAACCTTGTTCTCGTGGATGGAGACATCACAGTGTGGACCTCAAACACCTCAGGTGCCGGTGTTCAAGCAGCAGTCATGGCAGAATCCGGCAACTTCATCCTCCAGAACGCCAACAACCACCCTGTGTGGCAGAGTTTTTCTCAACCTTCCGACACTCTCCTCCCCAACCAGCTTCTAACAGTGTCTTCAGAACTAACTTCATCTAAGTCTTCTTCTCATGGTGGCTACTATTCTCTCAAAATGCTTCAACAGCGTACTTCCTTAAGCCTTGCTCTCACTTACAATCTCCTTGAGACTTACCAAGCCTCAGATGAATCATACACCAACTATTCCTATTGGAAAGGCCCTGATATCTCCAATGTGACTGGGGAGGTTATAGCAGTTTTAGACCATGCTGGGAGCTTTGGGATTGTGTATGGAGACTCCTCTGATGGTGCAGTGTATGTGTACAAGAATGATGGTGACGATGCAGGCTTGCCTTCTGCAGTTAATCAATCTGCACCATCGACTGTTCTCAGGAGACTAACACTGGAAAAGAATGGCAATCTGCGGTTGTATCGATGGGACGAAGTGAATGGCTCAAGGCAGTGGGTGCCACAGTGGGCTGCAGTTTCAAATCCATGTGACATTGCTGGAGTTTGTGGCAACGGGGTTTGCAATTTGGATAGAAGTAAGACAAAAGCCACTTGCACTTGCTTGCCAGGAACTTCTAAAGTTGGGAGGGATGGTCTGTGCTATGAGAATTCATCTCTAGTGGGAAAATGCAATGGCAAACACGAAAACCTGACATCCCAGTTTAGGATTTCGACGGTGCAGCAAACCAACTATTATTTTTCTGACATTTCAGTTATAGCTAACTACAGTGATATTTCTAATGAGTCAAAATGTGGGGATGCTTGCTTGTCAGAATGTGATTGCGTGGCTTCTGTTTATGGGCTAAATGAGGAGAGAGCATATTGTTGGGTGTTGAGGAGCTTAAGTTATGGTGGTTTTGAAGATACAGGATCAACTTTGTTTGTGAAAGTAAGAGCAAATGGGTCATGGACTCCAGAAGGCCAAGGAGGGTCTAATAATAGCTCTTCTGGTGGAATGGGAAGTGCAAAGGAGAAGGCTGTGATTATTCCCACTGTTTTTAGCATGGTAGTTCTCATTGTTTTGCTGAGTTTATTACTGTATTACAGCGTTCACAGGAAAAGAACTTTGAAAAGGGAGATGGAAAGTTCCTTGATCTTATCAGGTGCTCCAATGAATTTCACATACCGTGATTTGCAGATCAGGACATGCAACTTTTCACAGCTGCTAGGAACAGGTGGGTTTGGCAGTGTATATAAAGGAAGCCTGGGAGACGGTACTCTAGTGGCAGTGAAGAAACTTGACAGGGTTTTGCCCCATGGAGAGAAGGAATTCATCACTGAAGTAAACACTATTGGCTCAATGCATCATATGAATTTGGTTCGCCTATGCGGCTATTGTTCTGAGGGGTCACATAGGCTTCTGGTTTATGAGTTCATGAAGAATGGGTCCTTGGATAAGTGGATCTTCACTTCGTATCAAGGGCGAGATAGATTGTTGGATTGGACAACTCGTTTCAATATAGCCATAGCTACTGCACAAGGAATTGCATACTTTCATGAACAATGCAGGGATAGGATAATACACTGTGACATAAAACCGGAGAATATATTGGTGGACGACAACTTTTGTCCTAAAGTATCTGATTTTGGACTGGCGAAATTGATGGGAAGGGAGCACTCTCATGTGGTGACAATGGTGAGAGGCACAAGAGGTTATTTGGCACCAGAATGGGTTAGTAATCGCCCTATAACTGTCAAAGCTGATGTTTACAGCTATGGGATGCTTCTTTTAGAGATCATTGGTGGTAGGAGAAATCTTGACATGTCCTTTGGTCCTGAGGATTTCTTCTATCCTGGTTGGGCTTACAAGGAGATGACAAATGGGTCAACAATTAAAGTGGCAGATAGAAGATTAAATGGGGCAGTTGATGAAGAAGAGCTAACGAGAGCTCTGAAAGTTGCATTTTGGTGCATCCAAGATGAGGTATCCATGCGACCAACAATGGGGGAAGTGGTGAGACTTCTGGAAGATACGGTGGACATTAATATGCCACCGATGCCACAAACAGTGCTAGAGTTAATTGAGGAAGGCTTAGACCATGTATACAAAGCTATGAAAAGAGAGAATAATCACTCCAGCTCATTCACTCTTACAAGCCATCTCACATCTCGTGCCACATGTAGCAATTCCACAATGTCACCGAGATAG 2592 0.4448 MANAAYSSFSCYCLILALGLSSFSTCISAHVALGSRLLSSKALTWVSENGTFAFGFTPADTDNRLFVLGVWFAQLPGDPTIVWSPNRDSPVSQDATLELDTTGNLVLVDGDITVWTSNTSGAGVQAAVMAESGNFILQNANNHPVWQSFSQPSDTLLPNQLLTVSSELTSSKSSSHGGYYSLKMLQQRTSLSLALTYNLLETYQASDESYTNYSYWKGPDISNVTGEVIAVLDHAGSFGIVYGDSSDGAVYVYKNDGDDAGLPSAVNQSAPSTVLRRLTLEKNGNLRLYRWDEVNGSRQWVPQWAAVSNPCDIAGVCGNGVCNLDRSKTKATCTCLPGTSKVGRDGLCYENSSLVGKCNGKHENLTSQFRISTVQQTNYYFSDISVIANYSDISNESKCGDACLSECDCVASVYGLNEERAYCWVLRSLSYGGFEDTGSTLFVKVRANGSWTPEGQGGSNNSSSGGMGSAKEKAVIIPTVFSMVVLIVLLSLLLYYSVHRKRTLKREMESSLILSGAPMNFTYRDLQIRTCNFSQLLGTGGFGSVYKGSLGDGTLVAVKKLDRVLPHGEKEFITEVNTIGSMHHMNLVRLCGYCSEGSHRLLVYEFMKNGSLDKWIFTSYQGRDRLLDWTTRFNIAIATAQGIAYFHEQCRDRIIHCDIKPENILVDDNFCPKVSDFGLAKLMGREHSHVVTMVRGTRGYLAPEWVSNRPITVKADVYSYGMLLLEIIGGRRNLDMSFGPEDFFYPGWAYKEMTNGSTIKVADRRLNGAVDEEELTRALKVAFWCIQDEVSMRPTMGEVVRLLEDTVDINMPPMPQTVLELIEEGLDHVYKAMKRENNHSSSFTLTSHLTSRATCSNSTMSPR 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium341g00017 863 CDD B_lectin 37 152 IPR001480 -
Vium341g00017 863 FunFam serine/threonine-protein kinase PBS1-like 499 606 - -
Vium341g00017 863 SMART serkin_6 531 803 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium341g00017 863 Pfam Protein kinase domain 534 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium341g00017 863 PIRSF SRK 2 858 IPR024171 GO:0004674
Vium341g00017 863 Gene3D Transferase(Phosphotransferase) domain 1 607 819 - -
Vium341g00017 863 PANTHER OS07G0415500 PROTEIN 8 815 - -
Vium341g00017 863 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 607 813 - -
Vium341g00017 863 ProSitePatterns Protein kinases ATP-binding region signature. 537 560 IPR017441 GO:0005524
Vium341g00017 863 Pfam D-mannose binding lectin 80 167 IPR001480 -
Vium341g00017 863 SUPERFAMILY alpha-D-mannose-specific plant lectins 81 167 IPR036426 -
Vium341g00017 863 ProSiteProfiles Bulb-type lectin domain profile. 28 150 IPR001480 -
Vium341g00017 863 CDD STKc_IRAK 537 804 - -
Vium341g00017 863 Gene3D Phosphorylase Kinase; domain 1 495 606 - -
Vium341g00017 863 ProSitePatterns Serine/Threonine protein kinases active-site signature. 654 666 IPR008271 GO:0004672|GO:0006468
Vium341g00017 863 FunFam Serine/threonine-protein kinase 32 150 - -
Vium341g00017 863 ProSiteProfiles Protein kinase domain profile. 531 807 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium341g00017 863 SUPERFAMILY Protein kinase-like (PK-like) 509 803 IPR011009 -
Vium341g00017 863 Gene3D - 29 151 IPR036426 -
Vium341g00017 863 SMART blect_4 36 152 IPR001480 -
Vium341g00017 863 Pfam S-locus glycoprotein domain 271 339 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium341g00017 Vium-Chr341 133994 138444 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium341g00017 514 813 Receptor kinase-like Gene Family AT5G20050 45.223 8.11e-77 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vium341g00017 Pkinase 2.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium341g00017 - - gmx:100794281 1550.8